CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSTNIG00000014352
(
Tetraodon nigroviridis
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSTNIG00000014352
T340530_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx1
M00832_2.00
Mus musculus
NRGTGTGAANN
NNTTCACACYN
PBM
Weirauch et al.(2013)
pTH3822
0.738
0.787
TBX1
M03570_2.00
Homo sapiens
ARGTGTKAAAWHARGTGTGA
TCACACYTDWTTTMACACYT
SELEX
Jolma et al.(2013)
TBX1_1
0.738
0.787
TBX1
M03571_2.00
Homo sapiens
AGGTGTGAWWTTCACACCT
AGGTGTGAAWWTCACACCT
SELEX
Jolma et al.(2013)
TBX1_2
0.738
0.787
TBX1
M03572_2.00
Homo sapiens
AGGTGTGA
TCACACCT
SELEX
Jolma et al.(2013)
TBX1_3
0.738
0.787
TBX1
M03573_2.00
Homo sapiens
YYTCACACMTYWRAGGTGTGAAA
TTTCACACCTYWRAKGTGTGARR
SELEX
Jolma et al.(2013)
TBX1_4
0.738
0.787
TBX1
M03574_2.00
Homo sapiens
YTCACACCTDKAGGTGTGAA
TTCACACCTMHAGGTGTGAR
SELEX
Jolma et al.(2013)
TBX1_5
0.738
0.787
TBX1
M05821_2.00
Homo sapiens
BDRGGTGTGARV
BYTCACACCYHV
SELEX
Yin et al.(2017)
TBX1_eDBD_HT-SELEX
0.738
0.787
Tbx1
M11386_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX1_07
0.738
0.787
TBX1
M05822_2.00
Homo sapiens
DNWGGTGTGARN
NYTCACACCWNH
SELEX
Yin et al.(2017)
TBX1_eDBD_Methyl-HT-SELEX
0.738
0.787
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000017369
T-box
1
183
MDALWQQFDQLGTEMIVTKAGRLRMFPIFQVQITGMYPAAEYVLLMDFVPVDDKRYRYAFHSSSWLVAGRADVVAPSRMHFHPDSPACGAQWMKQTVSFDSLKLTNNLMDDNGHMILNSMHRYQPRFHVVYVDPAPNSYLNAHRNFCSFSFPETRFMAVTAYQNHRITQLKIASNPFAKGFRT
Links
Other
T-box
family TFs
Other
Tetraodon nigroviridis
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPFOG00000007309
Poecilia formosa
ENSPFOG00000007309
I
0.869
Alligator_sinensis_CCG022145.1
Alligator sinensis
Alligator_sinensis_CCG022145.1
I
0.795
Aan_R010744
Calypte anna
Aan_R010744
I
0.781
ENSTGUG00000007382
Taeniopygia guttata
ENSTGUG00000007382
I
0.781
ENSGALG00000003599
Gallus gallus
ENSGALG00000003599
I
0.781
ENSACAG00000008549
Anolis carolinensis
ENSACAG00000008549
I
0.774
Ogr08509
Ophisaurus gracilis
Ogr08509
I
0.774
Pvit_16222
Pogona vitticeps
Pvit_16222
I
0.774
ENSMGAG00000004357
Meleagris gallopavo
ENSMGAG00000004357
I
0.766
ENSMPUG00000003900
Mustela putorius furo
ENSMPUG00000003900
I
0.760
Sakowv30001714m.g
Saccoglossus kowalevskii
Sakowv30001714m.g
I
0.758
CGI_10008753
Crassostrea gigas
CGI_10008753
I
0.754
tetur04g00890
Tetranychus urticae
tetur04g00890
I
0.749
LotgiG104372
Lottia gigantea
LotgiG104372
I
0.746
fgenesh2_kg.scaffold_118000001
Branchiostoma floridae
fgenesh2_kg.scaffold_118000001
I
0.745
ACYPI001903
Acyrthosiphon pisum
ACYPI001903
I
0.741
TBX10
Pteropus vampyrus
ENSPVAG00000008592
I
0.740
ENSMPUG00000004076
Mustela putorius furo
ENSMPUG00000004076
I
0.740
SMAR009230
Strigamia maritima
SMAR009230
I
0.740
DAPPUDRAFT_3881
Daphnia pulex
DAPPUDRAFT_3881
I
0.740
TBX10
Felis catus
ENSFCAG00000001760
I
0.740
TBX10
Canis familiaris
ENSCAFG00000011264
I
0.740
ENSBTAP00000015683-D1
Bos grunniens
ENSBTAP00000015683-D1
I
0.740
Myotis_brandtii_Tbx10_10030825
Myotis brandtii
Myotis_brandtii_Tbx10_10030825
I
0.740
ENSAMEG00000001098
Ailuropoda melanoleuca
ENSAMEG00000001098
I
0.740
tbx1.L
Xenopus laevis
XB-GENE-478088
I
0.739
tbx1.S
Xenopus laevis
XB-GENE-6254396
I
0.739
ENSPFOG00000009621
Poecilia formosa
ENSPFOG00000009621
I
0.739
tbx1
Xenopus tropicalis
XB-GENE-478084
I
0.739
Pvit_15846
Pogona vitticeps
Pvit_15846
I
0.739
ENSPFOG00000009540
Poecilia formosa
ENSPFOG00000009540
I
0.739
tbx1
Takifugu rubripes
ENSTRUG00000014017
I
0.739
YQE_10853
Dendroctonus ponderosae
YQE_10853
I
0.739
tbx1
Tetraodon nigroviridis
ENSTNIG00000016767
I
0.739
TBX1
Taeniopygia guttata
ENSTGUG00000008395
I
0.739
ENSONIG00000015827
Oreochromis niloticus
ENSONIG00000015827
I
0.739
ENSLACG00000004994
Latimeria chalumnae
ENSLACG00000004994
I
0.739
ENSLACG00000016333
Latimeria chalumnae
ENSLACG00000016333
I
0.739
tbx1
Gasterosteus aculeatus
ENSGACG00000013057
I
0.739
ENSFALG00000008041
Ficedula albicollis
ENSFALG00000008041
I
0.739
ENSAMXG00000020444
Astyanax mexicanus
ENSAMXG00000020444
I
0.739
tbx1
Danio rerio
ENSDARG00000031891
I
0.739
ENSMEUG00000011624
Macropus eugenii
ENSMEUG00000011624
I
0.739
ENSGMOG00000018613
Gadus morhua
ENSGMOG00000018613
I
0.739
tbx1
Oryzias latipes
ENSORLG00000015256
I
0.739
TBX1
Monodelphis domestica
ENSMODG00000021176
I
0.739
TBX1
Dasypus novemcinctus
ENSDNOG00000035422
I
0.738
ENSSTOG00000004505
Ictidomys tridecemlineatus
ENSSTOG00000004505
I
0.738
Tbx1
Rattus norvegicus
ENSRNOG00000001892
I
0.738
ENSPANG00000015763
Papio anubis
ENSPANG00000015763
I
0.738
TBX1
Callithrix jacchus
ENSCJAG00000014591
I
0.738
ENSCSAG00000011818
Chlorocebus sabaeus
ENSCSAG00000011818
I
0.738
ENSFCAG00000005446
Felis catus
ENSFCAG00000005446
I
0.738
TBX1
Homo sapiens
ENSG00000184058
D
0.738
Tbx1
Mus musculus
ENSMUSG00000009097
D
0.738
TBX1
Loxodonta africana
ENSLAFG00000021555
I
0.738
ENSP00000331791-D2
Bos grunniens
ENSP00000331791-D2
I
0.738
TBX10
Procavia capensis
ENSPCAG00000009585
I
0.738
ENSGGOG00000009181
Gorilla gorilla
ENSGGOG00000009181
I
0.738
CapteG226618
Capitella teleta
CapteG226618
I
0.737
TBX1
Otolemur garnettii
ENSOGAG00000003596
I
0.735