CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSXMAG00000013655
(
Xiphophorus maculatus
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSXMAG00000013655
T340621_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Eomes
M00215_2.00
Mus musculus
RDGTGYBANN
NNTVRCACHY
PBM
Badis et al.(2009)
Eomes_0921
0.885
0.798
EOMES
M03563_2.00
Homo sapiens
DAGGTGTGAWNNN
NNNWTCACACCTH
SELEX
Jolma et al.(2013)
EOMES_1
0.885
0.792
EOMES
M03564_2.00
Homo sapiens
TVACACNTNNNDRNGTGTGA
TCACACNYHNNNANGTGTBA
SELEX
Jolma et al.(2013)
EOMES_2
0.885
0.792
EOMES
M02752_2.00
Homo sapiens
AGGTGTGAW
WTCACACCT
SELEX
Jolma et al.(2010)
EOMES_monomer
0.885
0.792
EOMES
M05807_2.00
Homo sapiens
DAGGTGTGAN
NTCACACCTH
SELEX
Yin et al.(2017)
EOMES_eDBD_HT-SELEX
0.885
0.792
EOMES
M09647_2.00
Homo sapiens
ARGTGWKAAN
NTTMWCACYT
Misc
Heinz et al.(2010)
H9-Eomes_GSE26097
0.885
0.792
EOMES
M05808_2.00
Homo sapiens
NABGTGYKAH
DTMRCACVTN
SELEX
Yin et al.(2017)
EOMES_eDBD_Methyl-HT-SELEX
0.885
0.792
Tbr1
M01028_2.00
Mus musculus
DTVRCAMNYH
DRNKTGYBAH
PBM
SebePedros et al.(2013)
pTH2659
0.870
0.798
TBR1
M03560_2.00
Homo sapiens
AGGTGTGAAN
NTTCACACCT
SELEX
Jolma et al.(2013)
TBR1_1
0.870
0.798
TBR1
M03561_2.00
Homo sapiens
RAGGTGTGAAH
DTTCACACCTY
SELEX
Jolma et al.(2013)
TBR1_2
0.870
0.798
TBX21
M03546_2.00
Homo sapiens
GGTGTGAHDTMACACY
RGTGTKAHDTCACACC
SELEX
Jolma et al.(2013)
TBX21_1
0.792
0.765
TBX21
M03547_2.00
Homo sapiens
DAGGTGTGAW
WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_2
0.792
0.765
TBX21
M03548_2.00
Homo sapiens
TMACACYTNNDAGGTGTGA
TCACACCTHNNARGTGTKA
SELEX
Jolma et al.(2013)
TBX21_3
0.792
0.765
TBX21
M03549_2.00
Homo sapiens
GGTGTGAWATCACACC
GGTGTGATWTCACACC
SELEX
Jolma et al.(2013)
TBX21_4
0.792
0.765
TBX21
M03550_2.00
Homo sapiens
DAGGTGTGAW
WTCACACCTH
SELEX
Jolma et al.(2013)
TBX21_5
0.792
0.765
TBX21
M03551_2.00
Homo sapiens
TSACACCWNMRAGGTGTGA
TCACACCTYKNWGGTGTSA
SELEX
Jolma et al.(2013)
TBX21_6
0.792
0.765
TBX21
M05793_2.00
Homo sapiens
DAGGTGTKAN
NTMACACCTH
SELEX
Yin et al.(2017)
TBX21_eDBD_HT-SELEX
0.792
0.765
TBX21
M09425_2.00
Homo sapiens
NDSDRGSTGWBRN
NYVWCASCYHSHN
Misc
Kulakovskiy et al.(2013)
TBX21_HUMAN.H11MO.0.A
0.792
0.765
TBX21
M05794_2.00
Homo sapiens
DASGTGTKAW
WTMACACSTH
SELEX
Yin et al.(2017)
TBX21_eDBD_Methyl-HT-SELEX
0.792
0.765
Tbx21
M09428_2.00
Mus musculus
DNDDSTGWSDND
HNHSWCASHHNH
Misc
Kulakovskiy et al.(2013)
TBX21_MOUSE.H11MO.0.A
0.792
0.760
Tbx21
M09648_2.00
Mus musculus
ADGTGWSAHN
NDTSWCACHT
Misc
Heinz et al.(2010)
CD8-Tbet_GSE33802
0.792
0.760
A0A075Q982_PATMI
M00734_2.00
Patiria miniata
NAGGTGTBAN
NTVACACCTN
PBM
Cheatle-Jarvela et al.(2014)
PmTbr
0.772
0.607
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.742
0.552
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXMAP00000013690
T-box
154
341
VLLNNYPLWAKFHKFQTEMIITKQGRRMFPFLSFNISVLDPSAHYNVYVDVVLADQHHWRYQGGKWVQCGKAEGNMPGNRIYMHPDSPNSGAHWMRQEVSFSKLKLTNNKGSTNNVAQMIVLQSLHKYQPRLHIVEVKEDGSEDPFLSSKAQTFVFPETQFIAVTAYQNADITQLKIDHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Xiphophorus maculatus
TFs
168 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000007717
Ailuropoda melanoleuca
ENSAMEG00000007717
I
0.000
HOMEZ
Bos taurus
ENSBTAG00000032686
I
0.000
HOMEZ
Canis familiaris
ENSCAFG00000011468
I
0.000
ACIN1
Callithrix jacchus
ENSCJAG00000008076
I
0.000
ENSCPOG00000025949
Cavia porcellus
ENSCPOG00000025949
I
0.000
ENSCSAG00000016052
Chlorocebus sabaeus
ENSCSAG00000016052
I
0.000
HOMEZ
Dasypus novemcinctus
ENSDNOG00000040503
I
0.000
HOMEZ
Felis catus
ENSFCAG00000030011
I
0.000
HOMEZ
Homo sapiens
ENSG00000215271
D
0.000
HOMEZ
Gorilla gorilla
ENSGGOG00000002195
I
0.000
HOMEZ
Myotis lucifugus
ENSMLUG00000004922
I
0.000
HOMEZ
Macaca mulatta
ENSMMUG00000014744
I
0.000
ENSMMUP00000019353
Macaca fascicularis
ENSMMUP00000019353
I
0.000
HOMEZ
Monodelphis domestica
ENSMODG00000024443
I
0.000
ENSMPUG00000006797
Mustela putorius furo
ENSMPUG00000006797
I
0.000
Homez
Mus musculus
ENSMUSG00000057156
D
0.000
HOMEZ
Ornithorhynchus anatinus
ENSOANG00000007642
I
0.000
ENSOARG00000019342
Ovis aries
ENSOARG00000019342
I
0.000
HOMEZ
Oryctolagus cuniculus
ENSOCUG00000012510
I
0.000
HOMEZ
Otolemur garnettii
ENSOGAG00000032616
I
0.000
ENSPANG00000004893
Papio anubis
ENSPANG00000004893
I
0.000
HOMEZ
Procavia capensis
ENSPCAG00000005821
I
0.000
ENSPPYG00000005662
Pongo abelii
ENSPPYG00000005662
I
0.000
HOMEZ
Pan troglodytes
ENSPTRG00000006165
I
0.000
Homez
Rattus norvegicus
ENSRNOG00000014887
I
0.000
ENSSHAG00000014748
Sarcophilus harrisii
ENSSHAG00000014748
I
0.000
HOMEZ
Sus scrofa
ENSSSCG00000028190
I
0.000
ENSSTOG00000020653
Ictidomys tridecemlineatus
ENSSTOG00000020653
I
0.000
ENSTSYG00000004720
Tarsius syrichta
ENSTSYG00000004720
I
0.000
Myotis_brandtii_HOMEZ_10009432
Myotis brandtii
Myotis_brandtii_HOMEZ_10009432
I
0.000