CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00017929001
(
Oikopleura dioica
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
SNAPOd2T00017929001
T341264_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TBX18
M05797_2.00
Homo sapiens
DDAGGTGTGARV
BYTCACACCTHH
SELEX
Yin et al.(2017)
TBX18_eDBD_HT-SELEX
0.778
0.665
TBX18
M11380_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX18_01
0.778
0.665
TBX18
M05798_2.00
Homo sapiens
NDAGGYGTGAAN
NTTCACRCCTHN
SELEX
Yin et al.(2017)
TBX18_eDBD_Methyl-HT-SELEX
0.778
0.665
TBX15
M03554_2.00
Homo sapiens
AGGTGTGAAATTCACACCT
AGGTGTGAATTTCACACCT
SELEX
Jolma et al.(2013)
TBX15_1
0.768
0.665
TBX15
M03555_2.00
Homo sapiens
AGGTGTGA
TCACACCT
SELEX
Jolma et al.(2013)
TBX15_2
0.768
0.665
TBX15
M05795_2.00
Homo sapiens
NRSGTGTBAN
NTVACACSYN
SELEX
Yin et al.(2017)
TBX15_eDBD_HT-SELEX
0.768
0.665
TBX15
M11378_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_01
0.768
0.665
TBX15
M11379_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX15_02
0.768
0.665
TBX15
M05796_2.00
Homo sapiens
NDSGYGTBAN
NTVACRCSHN
SELEX
Yin et al.(2017)
TBX15_eDBD_Methyl-HT-SELEX
0.768
0.665
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00017929001
T-box
248
455
VQLNGQQLWRTFYDLGTEMIITKVGRRMFPAIRAKVKGLKSNRKYIMALDIEAVDDNRYRYVYHSSKRPSPKTRIILKSEFKWMVAGTADNPVPPRVYIHPESPQTGESWMRQNSLVSFDKLKLTNNENDTHGHMILHSMHKYQPRIHVMDDSVQPNLNFQQRIDTEAPGVTTFVFPETQFITVTAYQNQQITRLKIDRNPFAKGFRN
Links
Other
T-box
family TFs
Other
Oikopleura dioica
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000016815
Pongo abelii
ENSPPYG00000016815
I
0.778
ENSPFOG00000000670
Poecilia formosa
ENSPFOG00000000670
I
0.778
ENSONIG00000001051
Oreochromis niloticus
ENSONIG00000001051
I
0.778
ENSPSIG00000013362
Pelodiscus sinensis
ENSPSIG00000013362
I
0.778
TBX18
Pan troglodytes
ENSPTRG00000018390
I
0.778
ENSSHAG00000010820
Sarcophilus harrisii
ENSSHAG00000010820
I
0.778
TBX18
Pteropus vampyrus
ENSPVAG00000016771
I
0.778
TBX18
Otolemur garnettii
ENSOGAG00000004300
I
0.778
ENSNLEG00000012797
Nomascus leucogenys
ENSNLEG00000012797
I
0.778
TBX18
Myotis lucifugus
ENSMLUG00000011326
I
0.778
TBX18
Loxodonta africana
ENSLAFG00000015009
I
0.778
TBX18
Gorilla gorilla
ENSGGOG00000027982
I
0.778
TBX18
Macaca mulatta
ENSMMUG00000010599
I
0.778
TBX18
Monodelphis domestica
ENSMODG00000018361
I
0.778
Tbx18
Mus musculus
ENSMUSG00000032419
I
0.778
ENSMPUG00000005346
Mustela putorius furo
ENSMPUG00000005346
I
0.778
TBX18
Sus scrofa
ENSSSCG00000004290
I
0.778
ENSSTOG00000020544
Ictidomys tridecemlineatus
ENSSTOG00000020544
I
0.778
Gfo_R005492
Geospiza fortis
Gfo_R005492
I
0.778
ENSP00000358677
Macaca fascicularis
ENSP00000358677
I
0.778
Cmyd_10014386
Chelonia mydas
Cmyd_10014386
I
0.778
Myotis_brandtii_TBX18_10024963
Myotis brandtii
Myotis_brandtii_TBX18_10024963
I
0.778
Ogr10944
Ophisaurus gracilis
Ogr10944
I
0.778
tbx18
Xenopus tropicalis
XB-GENE-489907
I
0.778
Pvit_09354
Pogona vitticeps
Pvit_09354
I
0.778
Alligator_sinensis_CCG015231.1
Alligator sinensis
Alligator_sinensis_CCG015231.1
I
0.778
Aan_R001146
Calypte anna
Aan_R001146
I
0.778
tbx18
Tetraodon nigroviridis
ENSTNIG00000009690
I
0.778
TBX18
Taeniopygia guttata
ENSTGUG00000012504
I
0.778
TBX18
Tupaia belangeri
ENSTBEG00000007925
I
0.778
tbx18
Takifugu rubripes
ENSTRUG00000001419
I
0.778
TBX18
Tursiops truncatus
ENSTTRG00000005713
I
0.778
ENSXMAG00000010831
Xiphophorus maculatus
ENSXMAG00000010831
I
0.778
TBX18
Vicugna pacos
ENSVPAG00000006869
I
0.778
ENSGALG00000015834
Gallus gallus
ENSGALG00000015834
I
0.778
TBX18
Oryctolagus cuniculus
ENSOCUG00000002026
I
0.778
TBX18
Erinaceus europaeus
ENSEEUG00000013766
I
0.778
TBX18
Echinops telfairi
ENSETEG00000006457
I
0.778
TBX18
Canis familiaris
ENSCAFG00000002987
I
0.778
TBX18
Felis catus
ENSFCAG00000012657
I
0.778
TBX18
Callithrix jacchus
ENSCJAG00000015218
I
0.778
ENSCPOG00000008004
Cavia porcellus
ENSCPOG00000008004
I
0.778
TBX18
Dasypus novemcinctus
ENSDNOG00000049259
I
0.778
TBX18
Equus caballus
ENSECAG00000005787
I
0.778
ENSCSAG00000017375
Chlorocebus sabaeus
ENSCSAG00000017375
I
0.778
ENSAMXG00000004418
Astyanax mexicanus
ENSAMXG00000004418
I
0.778
ENSFALG00000002783
Ficedula albicollis
ENSFALG00000002783
I
0.778
ENSAMEG00000015853
Ailuropoda melanoleuca
ENSAMEG00000015853
I
0.778
tbx18
Gasterosteus aculeatus
ENSGACG00000005602
I
0.778
TBX18
Homo sapiens
ENSG00000112837
D
0.778
TBX18
Anolis carolinensis
ENSACAG00000003859
I
0.778
tbx18
Danio rerio
ENSDARG00000036930
I
0.769
ENSGMOG00000003658
Gadus morhua
ENSGMOG00000003658
I
0.769
tbx15
Takifugu rubripes
ENSTRUG00000003945
I
0.768
TBX15
Cavia porcellus
ENSCPOG00000000615
I
0.768
tbx15
Tetraodon nigroviridis
ENSTNIG00000015660
I
0.768
ENSCSAG00000001712
Chlorocebus sabaeus
ENSCSAG00000001712
I
0.768
tbx15
Danio rerio
ENSDARG00000002582
I
0.768
ENSSARG00000007424
Sorex araneus
ENSSARG00000007424
I
0.768
Tbx15
Rattus norvegicus
ENSRNOG00000019565
I
0.768
ENSSHAG00000012785
Sarcophilus harrisii
ENSSHAG00000012785
I
0.768
TBX15
Callithrix jacchus
ENSCJAG00000005662
I
0.768
ENSSTOG00000013040
Ictidomys tridecemlineatus
ENSSTOG00000013040
I
0.768
TBX15
Anolis carolinensis
ENSACAG00000008131
I
0.768
TBX15
Canis familiaris
ENSCAFG00000009976
I
0.768
Cmyd_10005629
Chelonia mydas
Cmyd_10005629
I
0.768
Brh_R004487
Buceros rhinoceros
Brh_R004487
I
0.768
Alligator_sinensis_CCG012713.1
Alligator sinensis
Alligator_sinensis_CCG012713.1
I
0.768
ENSAPLG00000009645
Anas platyrhynchos
ENSAPLG00000009645
I
0.768
ENSP00000358437-D1
Bos grunniens
ENSP00000358437-D1
I
0.768
ENSAMXG00000005724
Astyanax mexicanus
ENSAMXG00000005724
I
0.768
ENSP00000358437
Macaca fascicularis
ENSP00000358437
I
0.768
Afo_R005490
Aptenodytes forsteri
Afo_R005490
I
0.768
Aan_R013329
Calypte anna
Aan_R013329
I
0.768
Pvit_04496
Pogona vitticeps
Pvit_04496
I
0.768
Myotis_brandtii_Tbx15_10011211
Myotis brandtii
Myotis_brandtii_Tbx15_10011211
I
0.768
ENSAMEG00000008160
Ailuropoda melanoleuca
ENSAMEG00000008160
I
0.768
ENSVPAG00000010265
Vicugna pacos
ENSVPAG00000010265
I
0.768
TBX15
Pan troglodytes
ENSPTRG00000001172
I
0.768
Ogr00863
Ophisaurus gracilis
Ogr00863
I
0.768
TBX15
Tursiops truncatus
ENSTTRG00000011006
I
0.768
TBX15
Pteropus vampyrus
ENSPVAG00000015733
I
0.768
TBX15
Macaca mulatta
ENSMMUG00000009257
I
0.768
ENSOARG00000020376
Ovis aries
ENSOARG00000020376
I
0.768
TBX15
Oryctolagus cuniculus
ENSOCUG00000012320
I
0.768
TBX15
Erinaceus europaeus
ENSEEUG00000003919
I
0.768
TBX15
Otolemur garnettii
ENSOGAG00000007282
I
0.768
TBX15
Gorilla gorilla
ENSGGOG00000013468
I
0.768
Tbx15
Mus musculus
ENSMUSG00000027868
I
0.768
ENSPSIG00000017560
Pelodiscus sinensis
ENSPSIG00000017560
I
0.768
ENSMPUG00000001549
Mustela putorius furo
ENSMPUG00000001549
I
0.768
ENSFALG00000005042
Ficedula albicollis
ENSFALG00000005042
I
0.768
TBX15
Monodelphis domestica
ENSMODG00000005319
I
0.768
TBX15
Equus caballus
ENSECAG00000023325
I
0.768
ENSONIG00000015685
Oreochromis niloticus
ENSONIG00000015685
I
0.768
ENSPPYG00000000968
Pongo abelii
ENSPPYG00000000968
I
0.768
TBX15
Myotis lucifugus
ENSMLUG00000002958
I
0.768
TBX15
Meleagris gallopavo
ENSMGAG00000014235
I
0.768
ENSLOCG00000011023
Lepisosteus oculatus
ENSLOCG00000011023
I
0.768
TBX15
Homo sapiens
ENSG00000092607
D
0.768
TBX15
Felis catus
ENSFCAG00000023731
I
0.768
TBX15
Ochotona princeps
ENSOPRG00000004847
I
0.768
ENSPANG00000004604
Papio anubis
ENSPANG00000004604
I
0.768
TBX15
Procavia capensis
ENSPCAG00000016333
I
0.768
TBX15
Loxodonta africana
ENSLAFG00000018452
I
0.768
ENSGALG00000014776
Gallus gallus
ENSGALG00000014776
I
0.768
TBX18
Bos taurus
ENSBTAG00000018161
I
0.763
ENSP00000358677-D1
Bos grunniens
ENSP00000358677-D1
I
0.763
ENSOARG00000013317
Ovis aries
ENSOARG00000013317
I
0.763
ENSLOCG00000016254
Lepisosteus oculatus
ENSLOCG00000016254
I
0.763
ENSLACG00000015964
Latimeria chalumnae
ENSLACG00000015964
I
0.763
Tbx18
Rattus norvegicus
ENSRNOG00000010685
I
0.763
estExt_fgenesh2_pg.C_1050030
Branchiostoma floridae
estExt_fgenesh2_pg.C_1050030
I
0.762
e_gw.418.20.1
Branchiostoma floridae
e_gw.418.20.1
I
0.762
TBX15
Dasypus novemcinctus
ENSDNOG00000003930
I
0.759
NEMVEDRAFT_v1g88753
Nematostella vectensis
NEMVEDRAFT_v1g88753
I
0.756
tbx15
Xenopus tropicalis
XB-GENE-483924
I
0.756
TBX22
Monodelphis domestica
ENSMODG00000004255
I
0.751
tbx22
Danio rerio
ENSDARG00000091748
I
0.744
ENSXMAG00000015062
Xiphophorus maculatus
ENSXMAG00000015062
I
0.744
ENSPFOG00000018033
Poecilia formosa
ENSPFOG00000018033
I
0.744
TBX22
Bos taurus
ENSBTAG00000048060
I
0.742
ENSP00000362390-D1
Bos grunniens
ENSP00000362390-D1
I
0.742
ENSOARG00000000455
Ovis aries
ENSOARG00000000455
I
0.742
Aan_R004737
Calypte anna
Aan_R004737
I
0.742
ENSPSIG00000005286
Pelodiscus sinensis
ENSPSIG00000005286
I
0.742
TBX22
Gallus gallus
ENSGALG00000004093
I
0.742
TBX22
Meleagris gallopavo
ENSMGAG00000001700
I
0.742
TBX22
Equus caballus
ENSECAG00000014426
I
0.742
ENSMPUG00000012619
Mustela putorius furo
ENSMPUG00000012619
I
0.739
ENSLOCG00000014991
Lepisosteus oculatus
ENSLOCG00000014991
I
0.739
Sakowv30012255m.g
Saccoglossus kowalevskii
Sakowv30012255m.g
I
0.738
CGI_10005914
Crassostrea gigas
CGI_10005914
I
0.737
Cmyd_10007257
Chelonia mydas
Cmyd_10007257
I
0.735