CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L893_g17881
(
Steinernema glaseri
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00907 (T-box)
IPR001699
L893_g17881
T341784_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tbx2
M00830_2.00
Mus musculus
NYVDCACBHN
NDVGTGHBRN
PBM
Weirauch et al.(2013)
pTH3751
0.760
0.718
TBX2
M03556_2.00
Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC
SELEX
Jolma et al.(2013)
TBX2_1
0.760
0.718
TBX2
M03557_2.00
Homo sapiens
NAGGTGTBAWN
NWTVACACCTN
SELEX
Jolma et al.(2013)
TBX2_2
0.760
0.718
TBX2
M05799_2.00
Homo sapiens
NNVRCRCNNN
NNNGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX
0.760
0.718
Tbx2
M08044_2.00
Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC
ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2
0.760
0.718
TBX2
M11381_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q2
0.760
0.718
TBX2
M11382_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX2_Q5
0.760
0.718
TBX2
M05800_2.00
Homo sapiens
NNVRCRCBNN
NNVGYGYBNN
SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX
0.760
0.718
Tbx3
M00834_2.00
Mus musculus
NHNDCACNHN
NDNGTGHNDN
PBM
Weirauch et al.(2013)
pTH3998
0.758
0.724
TBX3
M05801_2.00
Homo sapiens
NDSGTGTBRN
NYVACACSHN
SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX
0.758
0.724
TBX3
M09426_2.00
Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH
Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C
0.758
0.724
Tbx3
M09429_2.00
Mus musculus
RRGGTGBBR
YVVCACCYY
Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B
0.758
0.724
TBX3
M05802_2.00
Homo sapiens
DAGGTGTKAN
NTMACACCTH
SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX
0.758
0.724
XP_008203914.1
M01029_2.00
Nasonia vitripennis
AGGTGTBA
TVACACCT
PBM
SebePedros et al.(2013)
pTH9336
0.735
0.680
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L893_g17881.t1
T-box
60
240
VELDDKELWESFSQVGTEMVITKSGRRIFPAFKVKVSGLDRKAKYFFIMDIIPADDQRYKFHNSRWITAGKADPEMPKKIYFHPESPATGEHWMQKGANFQKMKLTNNMSDKHGFTILNSMHKYQPRVHIVRADHPAQLLIATFHTFIFRETEFIAVTAYQNENVTQLKINHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Steinernema glaseri
TFs
143 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L889_g18009
Steinernema feltiae
L889_g18009
I
0.917
L898_g10464
Steinernema monticolum
L898_g10464
I
0.887
L892_g3119
Steinernema scapterisci
L892_g3119
I
0.883
L596_g26549
Steinernema carpocapsae
L596_g26549
I
0.883
PTRK_0001005500
Parastrongyloides trichosuri
PTRK_0001005500
I
0.796
SSTP_0000270400
Strongyloides stercoralis
SSTP_0000270400
I
0.787
SVE_1909900
Strongyloides venezuelensis
SVE_1909900
I
0.787
RSKR_0001075800
Rhabditophanes kr3021
RSKR_0001075800
I
0.787
SPAL_0001704100
Strongyloides papillosus
SPAL_0001704100
I
0.787
NECAME_13239
Necator americanus
NECAME_13239
I
0.786
ANCCEY_07585
Ancylostoma ceylanicum
ANCCEY_07585
I
0.786
ANCCAN_17341
Ancylostoma caninum
ANCCAN_17341
I
0.786
ACOC_0000095801
Angiostrongylus costaricensis
ACOC_0000095801
I
0.784
DICVIV_03029
Dictyocaulus viviparus
DICVIV_03029
I
0.784
ACAC_0001257201
Angiostrongylus cantonensis
ACAC_0001257201
I
0.784
HPLM_0000823101
Haemonchus placei
HPLM_0000823101
I
0.784
HCOI00950300
Haemonchus contortus
HCOI00950300
I
0.784
TELCIR_02934
Teladorsagia circumcincta
TELCIR_02934
I
0.784
RSKR_0000042800
Rhabditophanes kr3021
RSKR_0000042800
I
0.781
NEMVEDRAFT_v1g102530
Nematostella vectensis
NEMVEDRAFT_v1g102530
I
0.778
ENSONIG00000000187
Oreochromis niloticus
ENSONIG00000000187
I
0.776
ENSGMOG00000011728
Gadus morhua
ENSGMOG00000011728
I
0.776
tbx3a
Oryzias latipes
ENSORLG00000007316
I
0.776
ENSXMAG00000005372
Xiphophorus maculatus
ENSXMAG00000005372
I
0.776
tbx3a
Gasterosteus aculeatus
ENSGACG00000016783
I
0.776
tbx3a
Takifugu rubripes
ENSTRUG00000015097
I
0.776
tbx3a
Tetraodon nigroviridis
ENSTNIG00000009035
I
0.776
ENSPFOG00000024759
Poecilia formosa
ENSPFOG00000024759
I
0.776
tbx3a
Danio rerio
ENSDARG00000002216
I
0.776
ENSAMXG00000009197
Astyanax mexicanus
ENSAMXG00000009197
I
0.776
CJA11793
Caenorhabditis japonica
CJA11793
I
0.775
EmuJ_001171900
Echinococcus multilocularis
EmuJ_001171900
I
0.770
ENSLOCG00000007598
Lepisosteus oculatus
ENSLOCG00000007598
I
0.770
CRE29327
Caenorhabditis remanei
CRE29327
I
0.767
CBG21316
Caenorhabditis briggsae
CBG21316
I
0.767
tbx2.S
Xenopus laevis
XB-GENE-6255176
I
0.766
HNAJ_0001193901
Hymenolepis nana
HNAJ_0001193901
I
0.762
WBGene00245873
Onchocerca volvulus
WBGene00245873
I
0.762
tbx3.S
Xenopus laevis
XB-GENE-1018237
I
0.761
ENSAMEG00000008826
Ailuropoda melanoleuca
ENSAMEG00000008826
I
0.760
ENSSTOG00000009350
Ictidomys tridecemlineatus
ENSSTOG00000009350
I
0.760
tbx2a
Danio rerio
ENSDARG00000018025
I
0.760
ENSSHAG00000012290
Sarcophilus harrisii
ENSSHAG00000012290
I
0.760
TBX2
Pan troglodytes
ENSPTRG00000009489
I
0.760
TBX2
Otolemur garnettii
ENSOGAG00000014815
I
0.760
TBX2
Ochotona princeps
ENSOPRG00000012183
I
0.760
ENSPSIG00000017536
Pelodiscus sinensis
ENSPSIG00000017536
I
0.760
TBX2
Tursiops truncatus
ENSTTRG00000004541
I
0.760
AAI57537
Xenopus tropicalis
AAI57537
I
0.760
ENSNLEG00000000423
Nomascus leucogenys
ENSNLEG00000000423
I
0.760
Alligator_sinensis_CCG002051.1
Alligator sinensis
Alligator_sinensis_CCG002051.1
I
0.760
Ogr11256
Ophisaurus gracilis
Ogr11256
I
0.760
tbx2
Xenopus tropicalis
XB-GENE-1018115
I
0.760
ENSCPOG00000001042
Cavia porcellus
ENSCPOG00000001042
I
0.760
TBX2
Bos taurus
ENSBTAG00000014278
I
0.760
tbx2.L
Xenopus laevis
XB-GENE-1018122
I
0.760
fgenesh2_pg.scaffold_89000016
Branchiostoma floridae
fgenesh2_pg.scaffold_89000016
I
0.760
TBX2
Sus scrofa
ENSSSCG00000027060
I
0.760
ENSGALG00000023577
Gallus gallus
ENSGALG00000023577
I
0.760
TBX2
Myotis lucifugus
ENSMLUG00000011673
I
0.760
TBX2
Monodelphis domestica
ENSMODG00000014204
I
0.760
ENSMMUG00000009859
Macaca mulatta
ENSMMUG00000009859
I
0.760
TBX2
Loxodonta africana
ENSLAFG00000006596
I
0.760
ENSLOCG00000005074
Lepisosteus oculatus
ENSLOCG00000005074
I
0.760
ENSMPUG00000015118
Mustela putorius furo
ENSMPUG00000015118
I
0.760
ENSFALG00000005458
Ficedula albicollis
ENSFALG00000005458
I
0.760
TBX2
Homo sapiens
ENSG00000121068
D
0.760
Tbx2
Mus musculus
ENSMUSG00000000093
D
0.760
TBX2
Microcebus murinus
ENSMICG00000016649
I
0.760
ENSMEUG00000010232
Macropus eugenii
ENSMEUG00000010232
I
0.760
Gfo_R010838
Geospiza fortis
Gfo_R010838
I
0.758
ENSNLEG00000000224
Nomascus leucogenys
ENSNLEG00000000224
I
0.758
Myotis_brandtii_Tbx3_10028216
Myotis brandtii
Myotis_brandtii_Tbx3_10028216
I
0.758
Alligator_sinensis_CCG008095.1
Alligator sinensis
Alligator_sinensis_CCG008095.1
I
0.758
ENSP00000257566
Macaca fascicularis
ENSP00000257566
I
0.758
Cmyd_10018098
Chelonia mydas
Cmyd_10018098
I
0.758
Afo_R010397
Aptenodytes forsteri
Afo_R010397
I
0.758
ENSBTAP00000028930-D1
Bos grunniens
ENSBTAP00000028930-D1
I
0.758
Ogr02099
Ophisaurus gracilis
Ogr02099
I
0.758
ENSLACG00000006293
Latimeria chalumnae
ENSLACG00000006293
I
0.758
ENSAMEG00000001090
Ailuropoda melanoleuca
ENSAMEG00000001090
I
0.758
TBX3
Callithrix jacchus
ENSCJAG00000009716
I
0.758
TBX3
Canis familiaris
ENSCAFG00000009216
I
0.758
TBX3
Bos taurus
ENSBTAG00000021706
I
0.758
TBX3
Homo sapiens
ENSG00000135111
D
0.758
ENSGALG00000008250
Gallus gallus
ENSGALG00000008250
I
0.758
TBX3
Cavia porcellus
ENSCPOG00000003952
I
0.758
TBX3
Microcebus murinus
ENSMICG00000010947
I
0.758
TBX3
Loxodonta africana
ENSLAFG00000002948
I
0.758
TBX3
Erinaceus europaeus
ENSEEUG00000008506
I
0.758
TBX3
Gorilla gorilla
ENSGGOG00000004238
I
0.758
ENSCSAG00000002344
Chlorocebus sabaeus
ENSCSAG00000002344
I
0.758
Pvit_16429
Pogona vitticeps
Pvit_16429
I
0.758
ENSMGAG00000010084
Meleagris gallopavo
ENSMGAG00000010084
I
0.758
ENSPANG00000008730
Papio anubis
ENSPANG00000008730
I
0.758
TBX3
Dasypus novemcinctus
ENSDNOG00000044358
I
0.758
ENSPPYG00000004995
Pongo abelii
ENSPPYG00000004995
I
0.758
ENSMPUG00000002720
Mustela putorius furo
ENSMPUG00000002720
I
0.758
Tbx3
Rattus norvegicus
ENSRNOG00000008706
I
0.758
TBX3
Ochotona princeps
ENSOPRG00000004462
I
0.758
ENSECAG00000012861
Equus caballus
ENSECAG00000012861
I
0.758
TBX3
Ornithorhynchus anatinus
ENSOANG00000007095
I
0.758
Tbx3
Mus musculus
ENSMUSG00000018604
D
0.758
ENSOARG00000006249
Ovis aries
ENSOARG00000006249
I
0.758
TBX3
Oryctolagus cuniculus
ENSOCUG00000014595
I
0.758
TBX3
Otolemur garnettii
ENSOGAG00000016212
I
0.758
ENSSHAG00000004253
Sarcophilus harrisii
ENSSHAG00000004253
I
0.758
TBX3
Pan troglodytes
ENSPTRG00000023749
I
0.758
TBX3
Tupaia belangeri
ENSTBEG00000014612
I
0.758
ENSTSYG00000008994
Tarsius syrichta
ENSTSYG00000008994
I
0.758
TBX3
Myotis lucifugus
ENSMLUG00000007567
I
0.758
CBN26017
Caenorhabditis brenneri
CBN26017
I
0.758
ENSSTOG00000009817
Ictidomys tridecemlineatus
ENSSTOG00000009817
I
0.758
ENSFALG00000007792
Ficedula albicollis
ENSFALG00000007792
I
0.758
TBX3
Sus scrofa
ENSSSCG00000009865
I
0.758
TBX3
Macaca mulatta
ENSMMUG00000015070
I
0.758
ENSAMXG00000007070
Astyanax mexicanus
ENSAMXG00000007070
I
0.757
tbx-2
Caenorhabditis elegans
WBGene00006543
I
0.756
TBX2
Taeniopygia guttata
ENSTGUG00000007813
I
0.753
ASU_08095
Ascaris suum
ASU_08095
I
0.752
Bm3498
Brugia malayi
Bm3498
I
0.752
Hba_14542
Heterorhabditis bacteriophora
Hba_14542
I
0.751
ENSLACG00000015364
Latimeria chalumnae
ENSLACG00000015364
I
0.751
Pvit_13524
Pogona vitticeps
Pvit_13524
I
0.751
tbx3
Xenopus tropicalis
XB-GENE-1018231
I
0.749
ENSAMXG00000001528
Astyanax mexicanus
ENSAMXG00000001528
I
0.749
tbx2b
Danio rerio
ENSDARG00000006120
I
0.749
tbx3.L
Xenopus laevis
XB-GENE-6252891
I
0.749
TBX3
Monodelphis domestica
ENSMODG00000012059
I
0.746
TBX4
Meleagris gallopavo
ENSMGAG00000007617
I
0.745
SPU_023386
Strongylocentrotus purpuratus
SPU_023386
I
0.743
ENSXMAG00000000486
Xiphophorus maculatus
ENSXMAG00000000486
I
0.743
ENSONIG00000001919
Oreochromis niloticus
ENSONIG00000001919
I
0.741
tbx2b
Gasterosteus aculeatus
ENSGACG00000020309
I
0.740
tbx3b
Danio rerio
ENSDARG00000061509
I
0.739
LotgiG117095
Lottia gigantea
LotgiG117095
I
0.739
AAEL018223
Aedes aegypti
AAEL018223
I
0.736
ACYPI000143
Acyrthosiphon pisum
ACYPI000143
I
0.736
tetur33g01070
Tetranychus urticae
tetur33g01070
I
0.736
EFV62265
Trichinella spiralis
EFV62265
I
0.735
XP_008203914.1
Nasonia vitripennis
XP_008203914.1
D
0.735
GB49684
Apis mellifera
GB49684
I
0.735
D917_09589
Trichinella nativa
D917_09589
I
0.735