fgenesh_masked-pag1_scaffold_1-abinit-gene-1.110 (Pythium aphanidermatum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 fgenesh_masked-pag1_scaffold_1-abinit-gene-1.110 T342546_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
The protein encoded by this gene is part of a large protein complex that is necessary for autophagy, the major process by which intracellular components are targeted to lysosomes for degradation. Defects in this gene are a cause of susceptibility to inflammatory bowel disease type 10 (IBD10). Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jun 2010]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPA00000013150 TBP 83 135
EPrPA00000013150 TBP 132 205

Links

Other TBP family TFs
Other Pythium aphanidermatum TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-pir_contig_920-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_920-fgenesh-gene-0.2 N 0.850
maker-piw_contig_412-fgenesh-gene-0.6 Pythium iwayamai maker-piw_contig_412-fgenesh-gene-0.6 N 0.850
Physo111770 Phytophthora sojae Physo111770 N 0.843
estExt_Genewise1Plus.C_30071 Phytophthora capsici estExt_Genewise1Plus.C_30071 N 0.843
PITG_07312 Phytophthora infestans PITG_07312 N 0.835
Phyra44780 Phytophthora ramorum Phyra44780 N 0.835
F443_17719 Phytophthora parasitica F443_17719 N 0.835
fgenesh_scip_prom.28083.3030 Phytophthora lateralis fgenesh_scip_prom.28083.3030 N 0.835
PYU1_G013989 Pythium ultimum PYU1_G013989 N 0.819
ALNC14_032430 Albugo laibachii ALNC14_032430 N 0.717