Cla011298 (Citrullus lanatus)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Cla011298 T343063_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.705 0.705
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.705 0.705
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla011298 TBP 5 58
Cla011298 TBP 66 137
Cla011298 TBP 152 174

Links

Other TBP family TFs
Other Citrullus lanatus TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g034590 Brassica oleracea Bo6g034590 N 0.791
Pm000066 Prunus mume Pm000066 I 0.772
Pavir.Ib04166 Panicum virgatum Pavir.Ib04166 I 0.772
GRMZM2G149238 Zea mays GRMZM2G149238 I 0.772
TBP2 Oryza sativa OS03G0657000 I 0.765
F775_26235 Aegilops tauschii F775_26235 I 0.765
Traes_4BS_4F52653D8 Triticum aestivum Traes_4BS_4F52653D8 I 0.765
OB03G33300 Oryza brachyantha OB03G33300 I 0.765
Cucsa.142180 Cucumis sativus Cucsa.142180 I 0.765
BRADI1G13220 Brachypodium distachyon BRADI1G13220 I 0.765
ORUFI12G18750 Oryza rufipogon ORUFI12G18750 I 0.765
OMERI11G15350 Oryza meridionalis OMERI11G15350 I 0.765
Traes_4AL_D48452758 Triticum aestivum Traes_4AL_D48452758 I 0.765
OLONG_012094 Oryza longistaminata OLONG_012094 I 0.765
ORGLA12G0202200 Oryza glaberrima ORGLA12G0202200 I 0.765
Traes_4DS_700213C0B Triticum aestivum Traes_4DS_700213C0B I 0.765
GRMZM2G161418 Zea mays GRMZM2G161418 I 0.765
OGLUM12G18540 Oryza glumaepatula OGLUM12G18540 I 0.765
OGLUM03G28780 Oryza glumaepatula OGLUM03G28780 I 0.765
GLYMA18G44460 Glycine max GLYMA18G44460 I 0.765
Si038805m.g Setaria italica Si038805m.g I 0.765
OBART12G16890 Oryza barthii OBART12G16890 I 0.765
GLYMA09G41330 Glycine max GLYMA09G41330 I 0.765
GLYMA16G25450 Glycine max GLYMA16G25450 I 0.765
OMERI03G24790 Oryza meridionalis OMERI03G24790 I 0.765
Si023295m.g Setaria italica Si023295m.g I 0.765
Sb01g012880 Sorghum bicolor Sb01g012880 I 0.765
OPUNC12G15370 Oryza punctata OPUNC12G15370 I 0.765
MLOC_44969 Hordeum vulgare MLOC_44969 I 0.765
OB03G33310 Oryza brachyantha OB03G33310 I 0.765
ORGLA03G0260300 Oryza glaberrima ORGLA03G0260300 I 0.765
SapurV1A.0308s0180 Salix purpurea SapurV1A.0308s0180 I 0.765
LjT45I18.100.nd Lotus japonicus LjT45I18.100.nd I 0.765
ORUFI03G29280 Oryza rufipogon ORUFI03G29280 I 0.765
PRUPE_ppa011711mg Prunus persica PRUPE_ppa011711mg I 0.765
OS12G0580300 Oryza sativa OS12G0580300 I 0.765
LPERR12G14180 Leersia perrieri LPERR12G14180 I 0.765
ONIVA03G29180 Oryza nivara ONIVA03G29180 I 0.765
BGIOSGA013244 Oryza indica BGIOSGA013244 I 0.765
Ciclev10022324m.g Citrus clementina Ciclev10022324m.g I 0.765
OBART03G28150 Oryza barthii OBART03G28150 I 0.765
Eucgr.J01752 Eucalyptus grandis Eucgr.J01752 I 0.765
OPUNC03G25660 Oryza punctata OPUNC03G25660 I 0.765
ONIVA12G15220 Oryza nivara ONIVA12G15220 I 0.765
POPTR_0013s05580 Populus trichocarpa POPTR_0013s05580 I 0.758
PRUPE_ppa011675mg Prunus persica PRUPE_ppa011675mg I 0.758
MTR_4g029010 Medicago truncatula MTR_4g029010 I 0.758
Sb08g022273 Sorghum bicolor Sb08g022273 I 0.758
TCM_026453 Theobroma cacao TCM_026453 I 0.758
MTR_7g072580 Medicago truncatula MTR_7g072580 I 0.758
29950.m001154 Ricinus communis 29950.m001154 I 0.758
Gorai.007G288000 Gossypium raimondii Gorai.007G288000 I 0.758
Gorai.004G244700 Gossypium raimondii Gorai.004G244700 I 0.758
BGIOSGA037671 Oryza indica BGIOSGA037671 I 0.758
Gorai.013G202900 Gossypium raimondii Gorai.013G202900 I 0.758
AMTR_s00064p00125250 Amborella trichopoda AMTR_s00064p00125250 I 0.758
PK11932.1 Cannabis sativa PK11932.1 I 0.758
SapurV1A.0680s0010 Salix purpurea SapurV1A.0680s0010 I 0.758
orange1.1g029591m.g Citrus sinensis orange1.1g029591m.g I 0.758
GLYMA19G28780 Glycine max GLYMA19G28780 I 0.758
Aquca_037_00296 Aquilegia coerulea Aquca_037_00296 I 0.758
cassava35684.valid.m1 Manihot esculenta cassava35684.valid.m1 I 0.758
cassava22625.valid.m1 Manihot esculenta cassava22625.valid.m1 I 0.758
GLYMA03G04500 Glycine max GLYMA03G04500 I 0.758
cassava35685.valid.m1 Manihot esculenta cassava35685.valid.m1 I 0.758
BRADI4G01150 Brachypodium distachyon BRADI4G01150 I 0.758
mgf012063m Mimulus guttatus mgf012063m I 0.758
mgf009543m Mimulus guttatus mgf009543m I 0.758
PDK_20s1715251g002 Phoenix dactylifera PDK_20s1715251g002 I 0.758
POPTR_0019s04890 Populus trichocarpa POPTR_0019s04890 I 0.752
Traes_5AS_03EE89960 Triticum aestivum Traes_5AS_03EE89960 I 0.752
mgf012506m Mimulus guttatus mgf012506m I 0.752
estExt_Genewise1.C_2460019 Physcomitrella patens estExt_Genewise1.C_2460019 I 0.752
e_gw1.13.259.1 Physcomitrella patens e_gw1.13.259.1 I 0.752
Eucgr.K01483 Eucalyptus grandis Eucgr.K01483 I 0.752
gene01591-v1.0-hybrid Fragaria vesca gene01591-v1.0-hybrid I 0.752
PK25605.1 Cannabis sativa PK25605.1 I 0.752
Lus10020260.g Linum usitatissimum Lus10020260.g I 0.752
Lus10002634.g Linum usitatissimum Lus10002634.g I 0.752
F775_26897 Aegilops tauschii F775_26897 I 0.752
VIT_06s0004g00180 Vitis vinifera VIT_06s0004g00180 I 0.752
MLOC_37365 Hordeum vulgare MLOC_37365 I 0.752
SELMODRAFT_270329 Selaginella moellendorffii SELMODRAFT_270329 I 0.752
SELMODRAFT_163230 Selaginella moellendorffii SELMODRAFT_163230 I 0.752
TRIUR3_20012 Triticum urartu TRIUR3_20012 I 0.752
Solyc01g028930.2 Solanum lycopersicum Solyc01g028930.2 I 0.752
GSMUA_Achr6G23210_001 Musa acuminata GSMUA_Achr6G23210_001 I 0.745
GSMUA_Achr1G26830_001 Musa acuminata GSMUA_Achr1G26830_001 I 0.745
GSMUA_Achr5G08990_001 Musa acuminata GSMUA_Achr5G08990_001 I 0.745
GSMUA_Achr7G01480_001 Musa acuminata GSMUA_Achr7G01480_001 I 0.745
ORUFI10G11330 Oryza rufipogon ORUFI10G11330 I 0.738
OS10G0432300 Oryza sativa OS10G0432300 I 0.738
OBART10G10890 Oryza barthii OBART10G10890 I 0.738
LPERR10G07850 Leersia perrieri LPERR10G07850 I 0.738
BGIOSGA031868 Oryza indica BGIOSGA031868 I 0.738
OGLUM10G10700 Oryza glumaepatula OGLUM10G10700 I 0.738
OB10G18440 Oryza brachyantha OB10G18440 I 0.738
OMERI10G08240 Oryza meridionalis OMERI10G08240 I 0.738
ORGLA10G0095800 Oryza glaberrima ORGLA10G0095800 I 0.738
ONIVA01G08510 Oryza nivara ONIVA01G08510 I 0.738
OPUNC10G09380 Oryza punctata OPUNC10G09380 I 0.738
Carubv10010337m.g Capsella rubella Carubv10010337m.g I 0.732
Bo3g185290 Brassica oleracea Bo3g185290 I 0.732
Thhalv10011790m.g Eutrema salsugineum Thhalv10011790m.g I 0.732
Bra030855 Brassica rapa Bra030855 I 0.732
Bra011920 Brassica rapa Bra011920 I 0.732
Bo6g051360 Brassica oleracea Bo6g051360 I 0.732
Bostr.6758s0027 Boechera stricta Bostr.6758s0027 I 0.732
Cagra.0001s0028 Capsella grandiflora Cagra.0001s0028 I 0.732
Traes_1AL_60B57FD46 Triticum aestivum Traes_1AL_60B57FD46 I 0.725
BRADI3G27190 Brachypodium distachyon BRADI3G27190 I 0.725
TRIUR3_32346 Triticum urartu TRIUR3_32346 I 0.725
TBP2 Arabidopsis lyrata fgenesh2_kg.1__4564__AT1G55520.2 I 0.725
Traes_1BS_2CB2C53C1 Triticum aestivum Traes_1BS_2CB2C53C1 I 0.725
Traes_1BL_2CB2C53C1 Triticum aestivum Traes_1BL_2CB2C53C1 I 0.725
TBP2 Arabidopsis thaliana AT1G55520 I 0.725
RO3G_15549 Rhizopus oryzae RO3G_15549 I 0.725
Pavir.J18057 Panicum virgatum Pavir.J18057 I 0.725
Si037375m.g Setaria italica Si037375m.g I 0.725
Pavir.Ib03379 Panicum virgatum Pavir.Ib03379 I 0.725
MLOC_50796 Hordeum vulgare MLOC_50796 I 0.725
PredSwiss_EST785.1 Pneumocystis carinii PredSwiss_EST785.1 I 0.718
Cagra.0690s0017 Capsella grandiflora Cagra.0690s0017 I 0.718
TBP1 Arabidopsis lyrata fgenesh2_kg.3__1428__AT3G13445.1 I 0.718
PNEG_00724 Pneumocystis murina PNEG_00724 I 0.718
e_gw1.11.241.1 Mucor circinelloides e_gw1.11.241.1 I 0.718
e_gw1.1.2234.1 Mucor circinelloides e_gw1.1.2234.1 I 0.718
Bra027434 Brassica rapa Bra027434 I 0.718
AMAG_01800 Allomyces macrogynus AMAG_01800 I 0.718
AMAG_04303 Allomyces macrogynus AMAG_04303 I 0.718
GLOINDRAFT_79885 Rhizophagus irregularis GLOINDRAFT_79885 I 0.718
Bostr.3640s0136 Boechera stricta Bostr.3640s0136 I 0.718
Bo5g132530 Brassica oleracea Bo5g132530 I 0.718
RO3G_16620 Rhizopus oryzae RO3G_16620 I 0.718
fgeneshPB_pg.12__294 Phycomyces blakesleeanus fgeneshPB_pg.12__294 I 0.718
AWRI1499_4207 Brettanomyces bruxellensis AWRI1499_4207 I 0.718
TBP1 Arabidopsis thaliana AT3G13445 I 0.718
Carubv10014676m.g Capsella rubella Carubv10014676m.g I 0.718
Thhalv10021552m.g Eutrema salsugineum Thhalv10021552m.g I 0.718
PredSwiss_ASS2010_1907.1 Pneumocystis carinii PredSwiss_ASS2010_1907.1 I 0.718
JL09_g2536 Pichia kudriavzevii JL09_g2536 I 0.718
HPODL_01164 Ogataea parapolymorpha HPODL_01164 I 0.718
SJAG_00421 Schizosaccharomyces japonicus SJAG_00421 I 0.718
fgeneshPB_pg.1__1085 Phycomyces blakesleeanus fgeneshPB_pg.1__1085 I 0.711
BATDEDRAFT_90475 Batrachochytrium dendrobatidis BATDEDRAFT_90475 I 0.711
XP_002490297.1 Pichia pastoris XP_002490297.1 I 0.711
CLUG_05066 Candida lusitaniae CLUG_05066 I 0.711
PredSwiss_CON251.1 Pneumocystis carinii PredSwiss_CON251.1 I 0.711
BN7_431 Wickerhamomyces ciferrii BN7_431 I 0.711
DEHA2G11836g Debaryomyces hansenii DEHA2G11836g I 0.711
Sb01g021297 Sorghum bicolor Sb01g021297 I 0.711
GNLVRS01_PISO0F09927g Millerozyma farinosa GNLVRS01_PISO0F09927g I 0.711
GNLVRS01_PISO0E08584g Millerozyma farinosa GNLVRS01_PISO0E08584g I 0.711
e_gwh1.1.1.994.1 Pichia stipitis e_gwh1.1.1.994.1 I 0.711
SELMODRAFT_16705 Selaginella moellendorffii SELMODRAFT_16705 I 0.711
SELMODRAFT_37142 Selaginella moellendorffii SELMODRAFT_37142 I 0.711
KUCA_T00005097001 Kuraishia capsulata KUCA_T00005097001 I 0.711
TRIUR3_13880 Triticum urartu TRIUR3_13880 I 0.711
Traes_5BS_AD70A5AF7 Triticum aestivum Traes_5BS_AD70A5AF7 I 0.711
PICST_38880 Scheffersomyces stipitis PICST_38880 I 0.711
CANTEDRAFT_116365 Candida tenuis CANTEDRAFT_116365 I 0.711
CLUG_05066 Clavispora lusitaniae CLUG_05066 I 0.711
PAS_chr1-4_0183 Komagataella pastoris PAS_chr1-4_0183 I 0.711
PGUG_04298 Candida guilliermondii PGUG_04298 I 0.705
LELG_01062 Lodderomyces elongisporus LELG_01062 I 0.705
CPAG_04505 Candida parapsilosis CPAG_04505 I 0.705
SAKL0H18788g Lachancea kluyveri SAKL0H18788g I 0.705
NCAS_0A03870 Naumovozyma castellii NCAS_0A03870 I 0.705
6417_YER148W Saccharomyces paradoxus 6417_YER148W I 0.705
Scas_Contig555.3 Saccharomyces castellii Scas_Contig555.3 I 0.705
Kpol_1032p36 Vanderwaltozyma polyspora Kpol_1032p36 I 0.705
6631_YER148W Saccharomyces bayanus 6631_YER148W I 0.705
6284_YER148W Saccharomyces mikatae 6284_YER148W I 0.705
NDAI_0E03380 Naumovozyma dairenensis NDAI_0E03380 I 0.705
PGUG_04298 Meyerozyma guilliermondii PGUG_04298 I 0.705
AGOS_AGR134W Ashbya gossypii AGOS_AGR134W I 0.705
ZBAI_07023 Zygosaccharomyces bailii ZBAI_07023 I 0.705
ZBAI_02629 Zygosaccharomyces bailii ZBAI_02629 I 0.705
SPT15 Saccharomyces cerevisiae YER148W D 0.705
ZYRO0G14806g Zygosaccharomyces rouxii ZYRO0G14806g I 0.705
Ecym_5549 Eremothecium cymbalariae Ecym_5549 I 0.705
CAGL0I06688g Candida glabrata CAGL0I06688g I 0.705
CORT_0A11870 Candida orthopsilosis CORT_0A11870 I 0.705
YALI0_B23056g Yarrowia lipolytica YALI0_B23056g I 0.705
KAFR_0B02330 Kazachstania africana KAFR_0B02330 I 0.705
SKUD_163604 Saccharomyces kudriavzevii SKUD_163604 I 0.705
AACERI_AaceriAGR134W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGR134W I 0.705
KNAG_0G01630 Kazachstania naganishii KNAG_0G01630 I 0.705
KLLA0_E10099g Kluyveromyces lactis KLLA0_E10099g I 0.705
SPAPADRAFT_58486 Spathaspora passalidarum SPAPADRAFT_58486 I 0.705
TBLA_0B08050 Tetrapisispora blattae TBLA_0B08050 I 0.705
SU7_0942 Saccharomyces arboricola SU7_0942 I 0.705
SPPG_03285 Spizellomyces punctatus SPPG_03285 I 0.705