Lus10031531.g (Linum usitatissimum)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 Lus10031531.g T343175_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT15
M01567_2.00
Saccharomyces cerevisiae
NNDWDAW

WTHWHNN
PBM
Zhu et al.(2009)
Spt15
0.766 0.766
SPT15
M08609_2.00
Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB

VNHNNGNWATATATAWDVVNN
Misc
DeBoer et al.(2011)
YER148W_798
0.766 0.766
SPT15
M11393_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$TBP_Q6
0.766 0.766
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.737 0.737
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.737 0.737
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.737 0.737
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.737 0.737
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.737 0.737
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.737 0.737
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.737 0.737
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.737 0.737
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.737 0.737
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031531 TBP 17 99
Lus10031531 TBP 107 190

Links

Other TBP family TFs
Other Linum usitatissimum TFs

699 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PMAA_095820 Penicillium marneffei PMAA_095820 N 0.000
PMAA_095820 Talaromyces marneffei PMAA_095820 N 0.000
TSTA_080510 Talaromyces stipitatus TSTA_080510 N 0.000
TSTA_080940 Talaromyces stipitatus TSTA_080940 N 0.000
TSTA_086330 Talaromyces stipitatus TSTA_086330 N 0.000
TSTA_069180 Talaromyces stipitatus TSTA_069180 N 0.000
TSTA_096630 Talaromyces stipitatus TSTA_096630 N 0.000
TSTA_097820 Talaromyces stipitatus TSTA_097820 N 0.000
TSTA_097920 Talaromyces stipitatus TSTA_097920 N 0.000
TSTA_093940 Talaromyces stipitatus TSTA_093940 N 0.000
TSTA_098800 Talaromyces stipitatus TSTA_098800 N 0.000
TSTA_103240 Talaromyces stipitatus TSTA_103240 N 0.000
TSTA_098060 Talaromyces stipitatus TSTA_098060 N 0.000
TSTA_125400 Talaromyces stipitatus TSTA_125400 N 0.000
TSTA_125380 Talaromyces stipitatus TSTA_125380 N 0.000
TSTA_124040 Talaromyces stipitatus TSTA_124040 N 0.000
TSTA_112760 Talaromyces stipitatus TSTA_112760 N 0.000
TSTA_112350 Talaromyces stipitatus TSTA_112350 N 0.000
TSTA_109860 Talaromyces stipitatus TSTA_109860 N 0.000
TSTA_106120 Talaromyces stipitatus TSTA_106120 N 0.000
TSTA_059810 Talaromyces stipitatus TSTA_059810 N 0.000
TSTA_055970 Talaromyces stipitatus TSTA_055970 N 0.000
TSTA_013450 Talaromyces stipitatus TSTA_013450 N 0.000
TSTA_009900 Talaromyces stipitatus TSTA_009900 N 0.000
TSTA_009440 Talaromyces stipitatus TSTA_009440 N 0.000
TSTA_009130 Talaromyces stipitatus TSTA_009130 N 0.000
TSTA_008380 Talaromyces stipitatus TSTA_008380 N 0.000
TSTA_008370 Talaromyces stipitatus TSTA_008370 N 0.000
TSTA_003830 Talaromyces stipitatus TSTA_003830 N 0.000
TSTA_002980 Talaromyces stipitatus TSTA_002980 N 0.000
TSTA_020700 Talaromyces stipitatus TSTA_020700 N 0.000
TSTA_022990 Talaromyces stipitatus TSTA_022990 N 0.000
TSTA_052640 Talaromyces stipitatus TSTA_052640 N 0.000
TSTA_050560 Talaromyces stipitatus TSTA_050560 N 0.000
TSTA_050400 Talaromyces stipitatus TSTA_050400 N 0.000
TSTA_035730 Talaromyces stipitatus TSTA_035730 N 0.000
TSTA_035660 Talaromyces stipitatus TSTA_035660 N 0.000
TSTA_029420 Talaromyces stipitatus TSTA_029420 N 0.000
TSTA_025810 Talaromyces stipitatus TSTA_025810 N 0.000
TSTA_024630 Talaromyces stipitatus TSTA_024630 N 0.000
TSTA_000600 Talaromyces stipitatus TSTA_000600 N 0.000