maker-nMf.1.1.scaf06410-snap-gene-0.8 (Meloidogyne floridensis)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 maker-nMf.1.1.scaf06410-snap-gene-0.8 T343542_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tbp
M00216_2.00
Mus musculus
NWWWWAW

WTWWWWN
PBM
Badis et al.(2009)
Tbp_pr781
0.707 0.707
TBP
M08231_2.00
Homo sapiens
YATTTGCATD

HATGCAAATR
ChIP-seq
Contrino et al.(2012)
Mv129
0.707 0.707
TBP
M09432_2.00
Homo sapiens
MTATAWAWRS

SYWTWTATAK
Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A
0.707 0.707
Tbp
M09433_2.00
Mus musculus
VTATAAAARS

SYTTTTATAB
Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A
0.707 0.707
TBP
M11388_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Transfac
Matys et al.(2006)
V$TATA_01
0.707 0.707
TBP
M11389_2.00
Homo sapiens
NCYWTAAAAD

HTTTTAWRGN
Transfac
Matys et al.(2006)
V$TATA_C
0.707 0.707
TBP
M11390_2.00
Homo sapiens
KATAAATW

WATTTATM
Transfac
Matys et al.(2006)
V$TBP_01
0.707 0.707
TBP
M11391_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6_01
0.707 0.707
TBP
M11392_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBP_Q6
0.707 0.707
TBP
M11491_2.00
Homo sapiens
VTATAWAWRVVNNNN

NNNNBBYWTWTATAB
Unknown
Mathelier et al.(2014)
MA0108.2
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
maker-nMf.1.1.scaf06410-snap-gene-0.8-mRNA-1 TBP 103 185
maker-nMf.1.1.scaf06410-snap-gene-0.8-mRNA-1 TBP 193 276

Links

Other TBP family TFs
Other Meloidogyne floridensis TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL012330 Aedes aegypti AAEL012330 I 0.723
AALB006989 Anopheles albimanus AALB006989 I 0.717
AARA005418 Anopheles arabiensis AARA005418 I 0.711
AATE010335 Anopheles atroparvus AATE010335 I 0.711
ACAC_0000032501 Angiostrongylus cantonensis ACAC_0000032501 I 0.766
ACEP14716 Atta cephalotes ACEP14716 I 0.713
ACHR004528 Anopheles christyi ACHR004528 I 0.711
ACOC_0000950001 Angiostrongylus costaricensis ACOC_0000950001 I 0.766
ACOM022852 Anopheles coluzzii ACOM022852 I 0.711
ACUA022207 Anopheles culicifacies ACUA022207 I 0.711
ACYPI001633 Acyrthosiphon pisum ACYPI001633 I 0.713
ADAC000533 Anopheles darlingi ADAC000533 I 0.717
ADIR004511 Anopheles dirus ADIR004511 I 0.711
AEPI009613 Anopheles epiroticus AEPI009613 I 0.711
AFAF020957 Anopheles farauti AFAF020957 I 0.711
Afo_R001483 Aptenodytes forsteri Afo_R001483 I 0.707
Afo_R014360 Aptenodytes forsteri Afo_R014360 I 0.707
AFUN000514 Anopheles funestus AFUN000514 I 0.711
AGAP010958 Anopheles gambiae AGAP010958 I 0.711
Alligator_sinensis_CCG004402.1 Alligator sinensis Alligator_sinensis_CCG004402.1 I 0.721
Alligator_sinensis_CCG013163.1 Alligator sinensis Alligator_sinensis_CCG013163.1 I 0.707
AMEM009001 Anopheles merus AMEM009001 I 0.711
AMIN009249 Anopheles minimus AMIN009249 I 0.711
ANCCAN_09966 Ancylostoma caninum ANCCAN_09966 I 0.760
ANCCAN_21534 Ancylostoma caninum ANCCAN_21534 I 0.762
ANCCEY_07137 Ancylostoma ceylanicum ANCCEY_07137 I 0.760
ANCDUO_27670 Ancylostoma duodenale ANCDUO_27670 I 0.760
Aqu1.225918 Amphimedon queenslandica Aqu1.225918 I 0.707
AQUA001233 Anopheles quadriannulatus AQUA001233 I 0.711
ASIS007912 Anopheles sinensis ASIS007912 I 0.711
ASTEI09026 Anopheles stephensi ASTEI09026 I 0.711
BGIBMGA010619 Bombyx mori BGIBMGA010619 I 0.741
BGLB001531 Biomphalaria glabrata BGLB001531 I 0.721
Bm5856 Brugia malayi Bm5856 I 0.754
BTMF_0000332301 Brugia timori BTMF_0000332301 I 0.754
BXY_1660200 Bursaphelenchus xylophilus BXY_1660200 I 0.766
CBG09138 Caenorhabditis briggsae CBG09138 I 0.760
CBN01059 Caenorhabditis brenneri CBN01059 I 0.760
Cflo_04179--XP_623088.1_APIME Camponotus floridanus Cflo_04179--XP_623088.1_APIME I 0.713
CJA15284 Caenorhabditis japonica CJA15284 I 0.760
CPIJ007600 Culex quinquefasciatus CPIJ007600 I 0.723
CPIJ018368 Culex quinquefasciatus CPIJ018368 I 0.723
CpipJ_CPIJ007600 Culex pipiens CpipJ_CPIJ007600 I 0.723
CpipJ_CPIJ018368 Culex pipiens CpipJ_CPIJ018368 I 0.723
CRE07760 Caenorhabditis remanei CRE07760 I 0.760
D917_07868 Trichinella nativa D917_07868 I 0.737
D918_02710 Trichuris suis D918_02710 I 0.743
DAPPUDRAFT_194512 Daphnia pulex DAPPUDRAFT_194512 I 0.713
DICVIV_03239 Dictyocaulus viviparus DICVIV_03239 I 0.760
DME_0000305201 Dracunculus medinensis DME_0000305201 I 0.754
EEL_0000831901 Elaeophora elaphi EEL_0000831901 I 0.754
EFV53163 Trichinella spiralis EFV53163 I 0.737
TBP Anolis carolinensis ENSACAG00000002576 I 0.707
ENSAMEG00000017055 Ailuropoda melanoleuca ENSAMEG00000017055 I 0.707
ENSAMXG00000000325 Astyanax mexicanus ENSAMXG00000000325 I 0.707
ENSAMXG00000003582 Astyanax mexicanus ENSAMXG00000003582 I 0.707
ENSAPLG00000006951 Anas platyrhynchos ENSAPLG00000006951 I 0.713
ENSAPLG00000012687 Anas platyrhynchos ENSAPLG00000012687 I 0.707
TBPL2 Bos taurus ENSBTAG00000018277 I 0.713
ENSBTAG00000046809 Bos taurus ENSBTAG00000046809 I 0.716
ENSBTAP00000010109-D2 Bos grunniens ENSBTAP00000010109-D2 I 0.707
ENSBTAP00000024325-D1 Bos grunniens ENSBTAP00000024325-D1 I 0.713
TBP Canis familiaris ENSCAFG00000004119 I 0.707
TBPL2 Canis familiaris ENSCAFG00000015052 I 0.707
TBPL2 Callithrix jacchus ENSCJAG00000018372 I 0.707
TBP Callithrix jacchus ENSCJAG00000020638 I 0.707
ENSCPOG00000001188 Cavia porcellus ENSCPOG00000001188 I 0.707
tbp Danio rerio ENSDARG00000014994 I 0.707
tbpl2 Danio rerio ENSDARG00000097302 I 0.707
ATG14 Dasypus novemcinctus ENSDNOG00000015108 I 0.707
ENSDNOG00000037993 Dasypus novemcinctus ENSDNOG00000037993 I 0.707
ENSDORG00000011521 Dipodomys ordii ENSDORG00000011521 I 0.707
TBP Equus caballus ENSECAG00000008516 I 0.707
ENSECAG00000008702 Equus caballus ENSECAG00000008702 I 0.707
ENSFALG00000003238 Ficedula albicollis ENSFALG00000003238 I 0.707
ENSFALG00000003735 Ficedula albicollis ENSFALG00000003735 I 0.719
TBP Homo sapiens ENSG00000112592 D 0.707
TBPL2 Homo sapiens ENSG00000182521 I 0.707
tbpl2 Gasterosteus aculeatus ENSGACG00000003968 I 0.701
tbp Gasterosteus aculeatus ENSGACG00000016147 I 0.707
TBP Gallus gallus ENSGALG00000011171 I 0.707
TBPL2 Gallus gallus ENSGALG00000012145 I 0.701
TBPL2 Gorilla gorilla ENSGGOG00000001055 I 0.707
TBP Gorilla gorilla ENSGGOG00000011840 I 0.707
ENSGMOG00000012435 Gadus morhua ENSGMOG00000012435 I 0.707
ENSLACG00000005118 Latimeria chalumnae ENSLACG00000005118 I 0.707
ENSLACG00000019034 Latimeria chalumnae ENSLACG00000019034 I 0.711
TBP Loxodonta africana ENSLAFG00000006043 I 0.707
ENSLOCG00000015481 Lepisosteus oculatus ENSLOCG00000015481 I 0.707
TBP Meleagris gallopavo ENSMGAG00000012179 I 0.707
TBPL2 Meleagris gallopavo ENSMGAG00000013657 I 0.701
TBPL2 Microcebus murinus ENSMICG00000000943 I 0.707
TBP Myotis lucifugus ENSMLUG00000014582 I 0.707
TBP Macaca mulatta ENSMMUG00000019917 I 0.707
TBPL2 Macaca mulatta ENSMMUG00000023041 I 0.707
TBP Monodelphis domestica ENSMODG00000005484 I 0.707
TBPL2 Monodelphis domestica ENSMODG00000007535 I 0.701
ENSMPUG00000005807 Mustela putorius furo ENSMPUG00000005807 I 0.713
ENSMPUG00000007213 Mustela putorius furo ENSMPUG00000007213 I 0.707
Tbp Mus musculus ENSMUSG00000014767 D 0.730
ENSNLEG00000000290 Nomascus leucogenys ENSNLEG00000000290 I 0.707
ENSNLEG00000012821 Nomascus leucogenys ENSNLEG00000012821 I 0.707
ENSOANG00000022637 Ornithorhynchus anatinus ENSOANG00000022637 I 0.741
ENSOARG00000005142 Ovis aries ENSOARG00000005142 I 0.707
ENSOARG00000021094 Ovis aries ENSOARG00000021094 I 0.713
TBP Oryctolagus cuniculus ENSOCUG00000007979 I 0.707
TBPL2 Oryctolagus cuniculus ENSOCUG00000014738 I 0.707
TBP Otolemur garnettii ENSOGAG00000013997 I 0.707
ENSONIG00000011742 Oreochromis niloticus ENSONIG00000011742 I 0.719
ENSONIG00000017061 Oreochromis niloticus ENSONIG00000017061 I 0.707
TBPL2 Ochotona princeps ENSOPRG00000016699 I 0.707
tbp Oryzias latipes ENSORLG00000010757 I 0.707
ENSP00000247219 Macaca fascicularis ENSP00000247219 I 0.707
ENSP00000375942 Macaca fascicularis ENSP00000375942 I 0.707
ENSPANG00000000569 Papio anubis ENSPANG00000000569 I 0.707
ENSPANG00000015296 Papio anubis ENSPANG00000015296 I 0.707
ENSPFOG00000014770 Poecilia formosa ENSPFOG00000014770 I 0.707
ENSPMAG00000006175 Petromyzon marinus ENSPMAG00000006175 I 0.707
ENSPPYG00000005840 Pongo abelii ENSPPYG00000005840 I 0.707
ENSPPYG00000017192 Pongo abelii ENSPPYG00000017192 I 0.707
ENSPSIG00000010865 Pelodiscus sinensis ENSPSIG00000010865 I 0.707
ENSPSIG00000013104 Pelodiscus sinensis ENSPSIG00000013104 I 0.707
TBPL2 Pan troglodytes ENSPTRG00000006376 I 0.707
TBP Pan troglodytes ENSPTRG00000018827 I 0.707
TBPL2 Pteropus vampyrus ENSPVAG00000001280 I 0.701
TBP Pteropus vampyrus ENSPVAG00000010820 I 0.707
Tbp Rattus norvegicus ENSRNOG00000001489 I 0.707
TBPL2 Sorex araneus ENSSARG00000002412 I 0.713
ENSSHAG00000015821 Sarcophilus harrisii ENSSHAG00000015821 I 0.707
ENSSSCG00000022683 Sus scrofa ENSSSCG00000022683 I 0.707
ENSSTOG00000008402 Ictidomys tridecemlineatus ENSSTOG00000008402 I 0.707
ENSSTOG00000015196 Ictidomys tridecemlineatus ENSSTOG00000015196 I 0.707
TBP Tupaia belangeri ENSTBEG00000004700 I 0.707
TBP Taeniopygia guttata ENSTGUG00000009824 I 0.707
tbpl2 Tetraodon nigroviridis ENSTNIG00000002597 I 0.707
tbp Tetraodon nigroviridis ENSTNIG00000017681 I 0.701
tbp Takifugu rubripes ENSTRUG00000007200 I 0.701
trf3 Takifugu rubripes ENSTRUG00000009283 I 0.707
ENSTSYG00000001512 Tarsius syrichta ENSTSYG00000001512 I 0.707
TBP Tursiops truncatus ENSTTRG00000014825 I 0.707
ENSXMAG00000001362 Xiphophorus maculatus ENSXMAG00000001362 I 0.713
ENSXMAG00000014937 Xiphophorus maculatus ENSXMAG00000014937 I 0.707
estExt_fgenesh2_pg.C_680056 Branchiostoma floridae estExt_fgenesh2_pg.C_680056 I 0.701
EVEC_0000621801 Enterobius vermicularis EVEC_0000621801 I 0.754
GB47180 Apis mellifera GB47180 I 0.725
Gfo_R009933 Geospiza fortis Gfo_R009933 I 0.707
GPLIN_001374400 Globodera pallida GPLIN_001374400 I 0.742
HCOI00585200 Haemonchus contortus HCOI00585200 I 0.760
HCOI02047500 Haemonchus contortus HCOI02047500 I 0.760
HelroG86082 Helobdella robusta HelroG86082 I 0.701
HHAL004028-PA Halyomorpha halys HHAL004028-PA I 0.725
HMEL016424 Heliconius melpomene HMEL016424 I 0.725
Hsal_00478--XP_623088.1_APIME Harpegnathos saltator Hsal_00478--XP_623088.1_APIME I 0.717
ISCW019416 Ixodes scapularis ISCW019416 I 0.719
JAAARDRAFT_628099 Jaapia argillacea JAAARDRAFT_628099 I 0.713
KGM_04261 Danaus plexippus KGM_04261 I 0.725
L596_g25394 Steinernema carpocapsae L596_g25394 I 0.754
L798_11200 Zootermopsis nevadensis L798_11200 I 0.711
L889_g25192 Steinernema feltiae L889_g25192 I 0.760
L892_g16529 Steinernema scapterisci L892_g16529 I 0.754
L893_g19284 Steinernema glaseri L893_g19284 I 0.725
L898_g32593 Steinernema monticolum L898_g32593 I 0.760
LCUP012241 Lucilia cuprina LCUP012241 I 0.701
LDEC008856 Leptinotarsa decemlineata LDEC008856 I 0.719
LLOJ006615 Lutzomyia longipalpis LLOJ006615 I 0.713
LOAG_01904 Loa loa LOAG_01904 I 0.754
MCINX007129 Melitaea cinxia MCINX007129 I 0.725
MDOA014641 Musca domestica MDOA014641 I 0.701
MhA1_Contig350.frz3.gene2 Meloidogyne hapla MhA1_Contig350.frz3.gene2 N 0.957
Minc02372 Meloidogyne incognita Minc02372 I 0.988
Minc14167 Meloidogyne incognita Minc14167 I 0.802
Myotis_brandtii_FAM120B_10014687 Myotis brandtii Myotis_brandtii_FAM120B_10014687 I 0.707
Myotis_brandtii_TBPL2_10011178 Myotis brandtii Myotis_brandtii_TBPL2_10011178 I 0.714
nAv.1.0.1.g05339 Acanthocheilonema viteae nAv.1.0.1.g05339 I 0.754
nDi.2.2.2.g01504 Dirofilaria immitis nDi.2.2.2.g01504 I 0.754
NECAME_03068 Necator americanus NECAME_03068 I 0.760
NEMVEDRAFT_v1g203375 Nematostella vectensis NEMVEDRAFT_v1g203375 I 0.711
nLs.2.1.2.g02336 Litomosoides sigmodontis nLs.2.1.2.g02336 I 0.754
nOo.2.0.1.g04267 Onchocerca ochengi nOo.2.0.1.g04267 I 0.754
nRc.2.0.1.g22836 Romanomermis culicivorax nRc.2.0.1.g22836 I 0.731
OESDEN_06921 Oesophagostomum dentatum OESDEN_06921 I 0.760
OFLC_0000347601 Onchocerca flexuosa OFLC_0000347601 I 0.755
Ogr19073 Ophisaurus gracilis Ogr19073 I 0.707
PHUM533080 Pediculus humanus PHUM533080 I 0.719
PPA00840 Pristionchus pacificus PPA00840 I 0.772
PPAI004956 Phlebotomus papatasi PPAI004956 I 0.713
PTRK_0001233700 Parastrongyloides trichosuri PTRK_0001233700 I 0.747
Pvit_02083 Pogona vitticeps Pvit_02083 I 0.707
Pvit_04001 Pogona vitticeps Pvit_04001 I 0.701
RSKR_0000436900 Rhabditophanes kr3021 RSKR_0000436900 I 0.753
Sakowv30026288m.g Saccoglossus kowalevskii Sakowv30026288m.g I 0.713
scaffold547-EXSNAP2012.2 Pristionchus exspectatus scaffold547-EXSNAP2012.2 I 0.772
SINV24483 Solenopsis invicta SINV24483 I 0.717
SMAR002219 Strigamia maritima SMAR002219 I 0.713
SMUV_0000093601 Syphacia muris SMUV_0000093601 I 0.754
SPAL_0001018500 Strongyloides papillosus SPAL_0001018500 I 0.747
SPU_012621 Strongylocentrotus purpuratus SPU_012621 I 0.707
SPU_014099 Strongylocentrotus purpuratus SPU_014099 I 0.707
SSTP_0000124500 Strongyloides stercoralis SSTP_0000124500 I 0.747
SVE_0506100 Strongyloides venezuelensis SVE_0506100 I 0.747
SVUK_0000188301 Strongylus vulgaris SVUK_0000188301 I 0.748
TC008403 Tribolium castaneum TC008403 I 0.713
TCLT_0000047501 Thelazia callipaeda TCLT_0000047501 I 0.754
TCNE_0001669001 Toxocara canis TCNE_0001669001 I 0.766
TELCIR_11261 Teladorsagia circumcincta TELCIR_11261 I 0.745
TELCIR_16292 Teladorsagia circumcincta TELCIR_16292 I 0.719
tetur35g00490 Tetranychus urticae tetur35g00490 I 0.719
TMUE_s0157001700 Trichuris muris TMUE_s0157001700 I 0.743
TriadG50358 Trichoplax adhaerens TriadG50358 I 0.713
TTRE_0000685401 Trichuris trichiura TTRE_0000685401 I 0.743
tbp-1 Caenorhabditis elegans WBGene00006542 I 0.766
WBGene00245666 Onchocerca volvulus WBGene00245666 I 0.754
WUBG_07006 Wuchereria bancrofti WUBG_07006 I 0.731
tbp Xenopus tropicalis XB-GENE-488470 I 0.707
tbp.L Xenopus laevis XB-GENE-6253887 I 0.707
tbp.S Xenopus laevis XB-GENE-865786 I 0.707
tbpl2 Xenopus tropicalis XB-GENE-876138 I 0.707
tbpl2.L Xenopus laevis XB-GENE-876147 I 0.707
XP_002160884.1 Hydra magnipapillata XP_002160884.1 I 0.701
XP_002160918.1 Hydra magnipapillata XP_002160918.1 I 0.701
YQE_02631 Dendroctonus ponderosae YQE_02631 I 0.719