CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.385930
(
Cucumis sativus
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Cucsa.385930
T344654_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCP21
M07292_2.00
Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN
Dap-seq
OMalley et al.(2016)
At5g08330_col_a
0.843
0.475
TCP21
M07293_2.00
Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a
0.843
0.475
OsI_08196
M02513_2.00
Oryza sativa
GGGCCCAC
GTGGGCCC
PBM
Weirauch et al.(2014)
pTH9274
0.842
0.446
TCP22
M07279_2.00
Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a
0.842
0.446
TCP22
M07280_2.00
Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY
Dap-seq
OMalley et al.(2016)
At1g72010_col
0.842
0.446
OS02G0635800
M02512_2.00
Oryza sativa
NBGGGCCCVN
NBGGGCCCVN
PBM
Weirauch et al.(2014)
pTH8856
0.841
0.465
TCP23
M00891_2.00
Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP23
0.838
0.475
TCP14
M07289_2.00
Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT
Dap-seq
OMalley et al.(2016)
TCP14_col_b
0.836
0.475
TCP7
M07294_2.00
Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY
Dap-seq
OMalley et al.(2016)
TCP7_col_a
0.835
0.465
PK12736.1
M01315_2.00
Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN
PBM
Lambert et al.(2019)
pTH10121
0.829
0.455
TCP8
M01311_2.00
Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN
PBM
Lambert et al.(2019)
pTH11569
0.827
0.455
TCP15
M00892_2.00
Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN
PBM
Franco-Zorrilla et al.(2014)
TCP15
0.827
0.436
TCP15
M07277_2.00
Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_col_a
0.827
0.436
TCP15
M07278_2.00
Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY
Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a
0.827
0.436
TCP15
M11394_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TCP15_01
0.827
0.436
TCP19
M02504_2.00
Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN
PBM
Weirauch et al.(2014)
pTH7452
0.824
0.406
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.385930.1
TCP
31
131
KAPKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKNIASATLDLPGCSKPCDPSSSNTNSTTTSYFEEETLGGNNY
Links
Other
TCP
family TFs
Other
Cucumis sativus
TFs
372 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy