CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10013748m.g
(
Capsella rubella
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
Carubv10013748m.g
T344755_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.838
0.410
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10013748m
TCP
149
312
PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTLSHQCGFSSGDESQTRPALGSMDTSSDLYELASMWTVDDRGSNTNTTVETRGNKVDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMK
Carubv10013749m
TCP
149
312
PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTLSHQCGFSSGDESQTRPALGSMDTSSDLYELASMWTVDDRGSNTNTTVETRGNKVDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMK
Links
Other
TCP
family TFs
Other
Capsella rubella
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy