Pavir.Ea02793 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ea02793 T344996_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK10344.1
M01313_2.00
Cannabis sativa
GGGACCAC

GTGGTCCC
PBM
Lambert et al.(2019)
pTH11464
0.950 0.819
TCP5
M02510_2.00
Arabidopsis lyrata
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH9233
0.938 0.792
TCP5
M02505_2.00
Arabidopsis thaliana
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH7523
0.935 0.792
LjT20A21.20.nc
M02519_2.00
Lotus japonicus
GGGACCAY

RTGGTCCC
PBM
Weirauch et al.(2014)
pTH9202
0.926 0.681
TCP2
M02503_2.00
Arabidopsis thaliana
NBGGKMCCVN

NBGGKMCCVN
PBM
Weirauch et al.(2014)
pTH8198
0.902 0.625
TCP2
M02508_2.00
Arabidopsis lyrata
GGSMCCAC

GTGGKSCC
PBM
Weirauch et al.(2014)
pTH9231
0.902 0.625
TCP13
M07283_2.00
Arabidopsis thaliana
GTGGGGACCACWD

HWGTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
PTF1_col_a
0.892 0.722
TCP13
M07284_2.00
Arabidopsis thaliana
NNBGGGACCACHN

NDGTGGTCCCVNN
Dap-seq
OMalley et al.(2016)
PTF1_colamp_a
0.892 0.722
TCP17
M07290_2.00
Arabidopsis thaliana
GTGGGGACCAC

GTGGTCCCCAC
Dap-seq
OMalley et al.(2016)
TCP17_col_a
0.884 0.681
TCP17
M07291_2.00
Arabidopsis thaliana
RTGGGGACCAC

GTGGTCCCCAY
Dap-seq
OMalley et al.(2016)
TCP17_colamp_a
0.884 0.681
TCP3
M02500_2.00
Arabidopsis thaliana
NDGGMCCACN

NGTGGKCCHN
PBM
Weirauch et al.(2014)
pTH8835
0.875 0.611
TCP3
M07274_2.00
Arabidopsis thaliana
DHNGGGACCACH

DGTGGTCCCNDH
Dap-seq
OMalley et al.(2016)
TCP3_colamp_a
0.875 0.611
TCP3
M07275_2.00
Arabidopsis thaliana
DNBGGGACCACHN

NDGTGGTCCCVNH
Dap-seq
OMalley et al.(2016)
TCP3_col
0.875 0.611
TCP4
M02514_2.00
Arabidopsis lyrata
BKGGGACCAC

GTGGTCCCMV
PBM
Weirauch et al.(2014)
pTH9313
0.868 0.583
TCP4
M02501_2.00
Arabidopsis thaliana
GGGACCAC

GTGGTCCC
PBM
Weirauch et al.(2014)
pTH8084
0.864 0.583
OS01G0213800
M11398_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PCF5_01
0.845 0.583
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea02793.1.p TCP 46 135
Pavir.Ea02793.2.p TCP 46 135

Links

Other TCP family TFs
Other Panicum virgatum TFs

426 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g07983 Acanthocheilonema viteae nAv.1.0.1.g07983 N 0.000
ALUE_0001931801 Ascaris lumbricoides ALUE_0001931801 N 0.000
ASU_11889 Ascaris suum ASU_11889 N 0.000
Bm10737 Brugia malayi Bm10737 N 0.000
BTMF_0000904601 Brugia timori BTMF_0000904601 N 0.000
BXY_1648300 Bursaphelenchus xylophilus BXY_1648300 N 0.000
nDi.2.2.2.g05271 Dirofilaria immitis nDi.2.2.2.g05271 N 0.000
EEL_0000994401 Elaeophora elaphi EEL_0000994401 N 0.000
nLs.2.1.2.g07965 Litomosoides sigmodontis nLs.2.1.2.g07965 N 0.000
LOAG_07813 Loa loa LOAG_07813 N 0.000
augustus_masked-nMf.1.1.scaf12176-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf12176-processed-gene-0.0 N 0.000
MhA1_Contig389.frz3.gene3 Meloidogyne hapla MhA1_Contig389.frz3.gene3 N 0.000
Minc08472 Meloidogyne incognita Minc08472 N 0.000
nOo.2.0.1.g04772 Onchocerca ochengi nOo.2.0.1.g04772 N 0.000
WBGene00246118 Onchocerca volvulus WBGene00246118 N 0.000
PTRK_0000295600 Parastrongyloides trichosuri PTRK_0000295600 N 0.000
PTRK_0000146000 Parastrongyloides trichosuri PTRK_0000146000 N 0.000
RSKR_0000113200 Rhabditophanes kr3021 RSKR_0000113200 N 0.000
RSKR_0001028000 Rhabditophanes kr3021 RSKR_0001028000 N 0.000
L596_g6816 Steinernema carpocapsae L596_g6816 N 0.000
L889_g27021 Steinernema feltiae L889_g27021 N 0.000
L893_g28874 Steinernema glaseri L893_g28874 N 0.000
L898_g23157 Steinernema monticolum L898_g23157 N 0.000
L892_g20462 Steinernema scapterisci L892_g20462 N 0.000
SPAL_0000268400 Strongyloides papillosus SPAL_0000268400 N 0.000
SSTP_0000600400 Strongyloides stercoralis SSTP_0000600400 N 0.000
SVE_1898000 Strongyloides venezuelensis SVE_1898000 N 0.000
SMUV_0000949901 Syphacia muris SMUV_0000949901 N 0.000
TCLT_0001028201 Thelazia callipaeda TCLT_0001028201 N 0.000
TCNE_0001183201 Toxocara canis TCNE_0001183201 N 0.000
WUBG_09447 Wuchereria bancrofti WUBG_09447 N 0.000