CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava14256.m1
(
Manihot esculenta
)
WRC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF08879 (WRC)
IPR014977
cassava14256.m1
T351435_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtGRF6
M02545_2.00
Arabidopsis thaliana
NNNNYDNN
NNHRNNNN
PBM
Weirauch et al.(2014)
pTH7356
0.814
0.814
AtGRF6
M07369_2.00
Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN
Dap-seq
OMalley et al.(2016)
AtGRF6_col_a
0.814
0.814
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava14256.m1
WRC
105
147
PEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVE
Links
Other
WRC
family TFs
Other
Manihot esculenta
TFs
600 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy