CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig588.11
(
Saccharomyces castellii
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
Scas_Contig588.11
T390687_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RSC3
M00082_2.00
Saccharomyces cerevisiae
GCGCGCGG
CCGCGCGC
PBM
Badis et al.(2008)
RSC3_2035
0.611
0.846
RSC3
M01576_2.00
Saccharomyces cerevisiae
NNNNNSCGNN
NNCGSNNNNN
PBM
Zhu et al.(2009)
Rsc3
0.611
0.846
RSC3
M07509_2.00
Saccharomyces cerevisiae
NNVCGCG
CGCGBNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1
0.611
0.846
RSC3
M08655_2.00
Saccharomyces cerevisiae
NNVCGCG
CGCGBNN
Misc
DeBoer et al.(2011)
YDR303C_580
0.611
0.846
RSC30
M00086_2.00
Saccharomyces cerevisiae
NGCGCGCGSN
NSCGCGCGCN
PBM
Badis et al.(2008)
RSC30_2087
0.537
0.769
RSC30
M01580_2.00
Saccharomyces cerevisiae
NNDCGSVNN
NNBSCGHNN
PBM
Zhu et al.(2009)
Rsc30
0.537
0.769
RSC30
M07513_2.00
Saccharomyces cerevisiae
VSCGCGCS
SGCGCGSB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1
0.537
0.769
RSC30
M08663_2.00
Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN
NBSBHNCSCGCGCGSGDBDND
Misc
DeBoer et al.(2011)
YHR056C_857
0.537
0.769
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig588.11
Zinc cluster
12
51
PACVQCRKRKIGCDRVKPICGNCRKTNKGDCFFPDIPGRY
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces castellii
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy