Scas_Contig588.11 (Saccharomyces castellii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 Scas_Contig588.11 T390687_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RSC3
M00082_2.00
Saccharomyces cerevisiae
GCGCGCGG

CCGCGCGC
PBM
Badis et al.(2008)
RSC3_2035
0.611 0.846
RSC3
M01576_2.00
Saccharomyces cerevisiae
NNNNNSCGNN

NNCGSNNNNN
PBM
Zhu et al.(2009)
Rsc3
0.611 0.846
RSC3
M07509_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1
0.611 0.846
RSC3
M08655_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
Misc
DeBoer et al.(2011)
YDR303C_580
0.611 0.846
RSC30
M00086_2.00
Saccharomyces cerevisiae
NGCGCGCGSN

NSCGCGCGCN
PBM
Badis et al.(2008)
RSC30_2087
0.537 0.769
RSC30
M01580_2.00
Saccharomyces cerevisiae
NNDCGSVNN

NNBSCGHNN
PBM
Zhu et al.(2009)
Rsc30
0.537 0.769
RSC30
M07513_2.00
Saccharomyces cerevisiae
VSCGCGCS

SGCGCGSB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1
0.537 0.769
RSC30
M08663_2.00
Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN

NBSBHNCSCGCGCGSGDBDND
Misc
DeBoer et al.(2011)
YHR056C_857
0.537 0.769
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig588.11 Zinc cluster 12 51

Links

Other Zinc cluster family TFs
Other Saccharomyces castellii TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
10181_Multiple Saccharomyces paradoxus 10181_Multiple I 0.537
10337_Multiple Saccharomyces bayanus 10337_Multiple I 0.537
4855_Multiple Saccharomyces paradoxus 4855_Multiple I 0.611
4894_YDR303C Saccharomyces bayanus 4894_YDR303C I 0.611
9825_Multiple Saccharomyces mikatae 9825_Multiple I 0.537
AACERI_AaceriAAL057C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL057C I 0.584
AGOS_AAL057C Ashbya gossypii AGOS_AAL057C I 0.584
Ecym_3200 Eremothecium cymbalariae Ecym_3200 I 0.592
KAFR_0E01300 Kazachstania africana KAFR_0E01300 I 0.676
Kpol_1005p2 Vanderwaltozyma polyspora Kpol_1005p2 I 0.611
Kpol_1023p41 Vanderwaltozyma polyspora Kpol_1023p41 I 0.609
NCAS_0F02700 Naumovozyma castellii NCAS_0F02700 I 0.683
NDAI_0C04170 Naumovozyma dairenensis NDAI_0C04170 I 0.659
RSC3 Saccharomyces cerevisiae YDR303C D 0.611
RSC30 Saccharomyces cerevisiae YHR056C D 0.537
SAKL0G09768g Lachancea kluyveri SAKL0G09768g I 0.577
SKUD_196709 Saccharomyces kudriavzevii SKUD_196709 I 0.611
SU7_1441 Saccharomyces arboricola SU7_1441 I 0.537
SU7_2665 Saccharomyces arboricola SU7_2665 I 0.611
TBLA_0C03390 Tetrapisispora blattae TBLA_0C03390 I 0.571
TDEL_0E03050 Torulaspora delbrueckii TDEL_0E03050 I 0.569
TPHA_0E01290 Tetrapisispora phaffii TPHA_0E01290 I 0.601
ZBAI_03963 Zygosaccharomyces bailii ZBAI_03963 I 0.587
ZBAI_09770 Zygosaccharomyces bailii ZBAI_09770 I 0.587
ZYRO0C13882g Zygosaccharomyces rouxii ZYRO0C13882g I 0.594