RSC3 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YDR303C T388341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RSC3
M00082_2.00
Saccharomyces cerevisiae
GCGCGCGG

CCGCGCGC
PBM
Badis et al.(2008)
RSC3_2035
(Direct) (Direct)
RSC3
M01576_2.00
Saccharomyces cerevisiae
NNNNNSCGNN

NNCGSNNNNN
PBM
Zhu et al.(2009)
Rsc3
(Direct) (Direct)
RSC3
M07509_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0374.1
(Direct) (Direct)
RSC3
M08655_2.00
Saccharomyces cerevisiae
NNVCGCG

CGCGBNN
Misc
DeBoer et al.(2011)
YDR303C_580
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RSC30
M00086_2.00
Saccharomyces cerevisiae
NGCGCGCGSN

NSCGCGCGCN
PBM
Badis et al.(2008)
RSC30_2087
0.537 0.795
RSC30
M01580_2.00
Saccharomyces cerevisiae
NNDCGSVNN

NNBSCGHNN
PBM
Zhu et al.(2009)
Rsc30
0.537 0.795
RSC30
M07513_2.00
Saccharomyces cerevisiae
VSCGCGCS

SGCGCGSB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0375.1
0.537 0.795
RSC30
M08663_2.00
Saccharomyces cerevisiae
HNHVHCSCGCGCGSGNDVSVN

NBSBHNCSCGCGCGSGDBDND
Misc
DeBoer et al.(2011)
YHR056C_857
0.537 0.795
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00082_2.00 Zinc cluster 11 50
M01576_2.00 Zinc cluster 12 51

DNA Binding Domains

Protein ID Domain From To Sequence
YDR303C Zinc cluster 12 51

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SU7_2665 Saccharomyces arboricola SU7_2665 I 0.683
SKUD_196709 Saccharomyces kudriavzevii SKUD_196709 I 0.683
4855_Multiple Saccharomyces paradoxus 4855_Multiple I 0.683
4894_YDR303C Saccharomyces bayanus 4894_YDR303C I 0.683
Kpol_1005p2 Vanderwaltozyma polyspora Kpol_1005p2 I 0.683
ZYRO0C13882g Zygosaccharomyces rouxii ZYRO0C13882g I 0.642
ZBAI_09770 Zygosaccharomyces bailii ZBAI_09770 I 0.634
ZBAI_03963 Zygosaccharomyces bailii ZBAI_03963 I 0.634
TBLA_0C03390 Tetrapisispora blattae TBLA_0C03390 I 0.618
NDAI_0C04170 Naumovozyma dairenensis NDAI_0C04170 I 0.611
NCAS_0F02700 Naumovozyma castellii NCAS_0F02700 I 0.611
Scas_Contig588.11 Saccharomyces castellii Scas_Contig588.11 I 0.611
Kpol_1023p41 Vanderwaltozyma polyspora Kpol_1023p41 I 0.609
KAFR_0E01300 Kazachstania africana KAFR_0E01300 I 0.603
TPHA_0E01290 Tetrapisispora phaffii TPHA_0E01290 I 0.601
Ecym_3200 Eremothecium cymbalariae Ecym_3200 I 0.592
AGOS_AAL057C Ashbya gossypii AGOS_AAL057C I 0.584
AACERI_AaceriAAL057C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAAL057C I 0.584
SAKL0G09768g Lachancea kluyveri SAKL0G09768g I 0.577
TDEL_0E03050 Torulaspora delbrueckii TDEL_0E03050 I 0.569
CAGL0H01507g Candida glabrata CAGL0H01507g I 0.540
9825_Multiple Saccharomyces mikatae 9825_Multiple I 0.537
SU7_1441 Saccharomyces arboricola SU7_1441 I 0.537
RSC30 Saccharomyces cerevisiae YHR056C D 0.537
10181_Multiple Saccharomyces paradoxus 10181_Multiple I 0.537
10337_Multiple Saccharomyces bayanus 10337_Multiple I 0.537