CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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12840_YKL222C
(
Saccharomyces mikatae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00172 (Zn_clus)
IPR001138
12840_YKL222C
T390748_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YKL222C
M00093_2.00
Saccharomyces cerevisiae
NNMVCGGARWN
NWYTCCGBKNN
PBM
Badis et al.(2008)
YKL222C_2044
0.546
0.718
YKL222C
M01586_2.00
Saccharomyces cerevisiae
NVCGGVNNN
NNNBCCGBN
PBM
Zhu et al.(2009)
Ykl222c
0.546
0.718
YKL222C
M07519_2.00
Saccharomyces cerevisiae
NACGGARWT
AWYTCCGTN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0428.1
0.546
0.718
YKL222C
M08674_2.00
Saccharomyces cerevisiae
NNNNBVVCGGARATWRNNBNN
NNVNNYWATYTCCGBBVNNNN
Misc
DeBoer et al.(2011)
YKL222C_806
0.546
0.718
For this family, TFs with SR scores >
0.537
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
12840_YKL222C
Zinc cluster
22
62
KSCLFCRLRKLKCDRGRPSCGSCSSRHQKSCNYEDNSSAKE
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces mikatae
TFs
2 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy