20955_YOR172W (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 20955_YOR172W T390812_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YRM1
M00106_2.00 		Saccharomyces cerevisiae
RCGGADAT
ATHTCCGY		 PBM
Badis et al.(2008)
YRM1_2064 		0.541 0.744
YRM1
M01595_2.00 		Saccharomyces cerevisiae
NNCGGAAATANNN
NNNTATTTCCGNN		 PBM
Zhu et al.(2009)
Yrm1 		0.541 0.744
YRM1
M07533_2.00 		Saccharomyces cerevisiae
VCGGARAT
ATYTCCGB		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0438.1 		0.541 0.744
YRM1
M08692_2.00 		Saccharomyces cerevisiae
SDNNNRCGGRWAWWVNDNNKW
WMNNHNBWWTWYCCGYNNNHS		 Misc
DeBoer et al.(2011)
YOR172W_813 		0.541 0.744
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
20955_YOR172W Zinc cluster 29 68

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_205008 Saccharomyces kudriavzevii SKUD_205008 I 0.579
23790_YOR172W Saccharomyces bayanus 23790_YOR172W N 0.567
YRM1 Saccharomyces cerevisiae YOR172W D 0.541
KAFR_0G02540 Kazachstania africana KAFR_0G02540 I 0.538