CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OB08G28690 *(Oryza brachyantha)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	OB08G28690	T003048_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.772	0.800
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.772	0.760
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.756	0.780
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.756	0.780
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.756	0.780
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.751	0.780
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.746	0.760
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.735	0.820
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.735	0.820
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.735	0.820
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.735	0.820
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.734	0.760
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.734	0.760
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.732	0.740
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.728	0.720
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.724	0.760
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.724	0.760
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.723	0.660
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.721	0.700
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.720	0.700
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.716	0.660
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.715	0.740
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.715	0.740
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.715	0.740
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.714	0.740
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.707	0.800
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.707	0.800
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.704	0.720
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.704	0.720
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.704	0.720
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.702	0.660
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.702	0.660
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.702	0.660
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.698	0.700
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.697	0.700
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.697	0.700
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.695	0.680
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.694	0.680
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.694	0.680
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.690	0.680
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.690	0.680
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.688	0.660
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.688	0.660
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.688	0.700
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.688	0.700
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.688	0.700
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.683	0.660
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.681	0.720
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.681	0.720
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.681	0.720
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.681	0.720
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.681	0.720
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OB08G28690.1	AP2	366	417	PRYRGVRQRPWGKWAAEIRDPVKAARVWLGTLHTAEEAARAYDAAAVRFKGS

Links
Other AP2 family TFs
Other *Oryza brachyantha* TFs

1565 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
29929.m004704	Ricinus communis	29929.m004704	D
AMTR_s00005p00185670	Amborella trichopoda	AMTR_s00005p00185670	I
AMTR_s00055p00209070	Amborella trichopoda	AMTR_s00055p00209070	I
Aquca_011_00297	Aquilegia coerulea	Aquca_011_00297	I
Aquca_123_00031	Aquilegia coerulea	Aquca_123_00031	I
GT-1	Arabidopsis thaliana	AT1G13450	D
GT-4	Arabidopsis thaliana	AT3G25990	D
Bo2g138840	Brassica oleracea	Bo2g138840	I
Bo5g017510	Brassica oleracea	Bo5g017510	I
Bo8g107400	Brassica oleracea	Bo8g107400	I
Bostr.0556s0275	Boechera stricta	Bostr.0556s0275	I
Bostr.13671s0104	Boechera stricta	Bostr.13671s0104	I
Bra019721	Brassica rapa	Bra019721	I
Bra026903	Brassica rapa	Bra026903	I
Bra036354	Brassica rapa	Bra036354	I
Cagra.3501s0157	Capsella grandiflora	Cagra.3501s0157	I
Cagra.6197s0012	Capsella grandiflora	Cagra.6197s0012	I
Carubv10009313m.g	Capsella rubella	Carubv10009313m.g	I
Carubv10017413m.g	Capsella rubella	Carubv10017413m.g	I
cassava11841.valid.m1	Manihot esculenta	cassava11841.valid.m1	I
cassava13991.valid.m1	Manihot esculenta	cassava13991.valid.m1	D
Ca_11315	Cicer arietinum	Ca_11315	I
Ciclev10031750m.g	Citrus clementina	Ciclev10031750m.g	I
Cucsa.394820	Cucumis sativus	Cucsa.394820	I
Eucgr.B03456	Eucalyptus grandis	Eucgr.B03456	I
Eucgr.J02286	Eucalyptus grandis	Eucgr.J02286	I
evm.TU.supercontig_130.35	Carica papaya	evm.TU.supercontig_130.35	I
evm.TU.supercontig_1453.1	Carica papaya	evm.TU.supercontig_1453.1	I
fgenesh2_kg.5__353__AT3G25990.1	Arabidopsis lyrata	fgenesh2_kg.5__353__AT3G25990.1	D
GLYMA11G37390	Glycine max	GLYMA11G37390	D
GLYMA18G01360	Glycine max	GLYMA18G01360	I
Gorai.008G163200	Gossypium raimondii	Gorai.008G163200	I
Gorai.009G333800	Gossypium raimondii	Gorai.009G333800	I
GRMZM2G047370	Zea mays	GRMZM2G047370	I
GSMUA_Achr3G19370_001	Musa acuminata	GSMUA_Achr3G19370_001	I
GSMUA_Achr5G17240_001	Musa acuminata	GSMUA_Achr5G17240_001	I
LjT04G17.70.nc	Lotus japonicus	LjT04G17.70.nc	I
Lus10015824.g	Linum usitatissimum	Lus10015824.g	I
Lus10036978.g	Linum usitatissimum	Lus10036978.g	I
MDP0000164819	Malus domestica	MDP0000164819	D
MDP0000275412	Malus domestica	MDP0000275412	I
mgf016368m	Mimulus guttatus	mgf016368m	I
MLOC_64014	Hordeum vulgare	MLOC_64014	I
MTR_3g085960	Medicago truncatula	MTR_3g085960	D
OB04G23970	Oryza brachyantha	OB04G23970	I
orange1.1g015940m.g	Citrus sinensis	orange1.1g015940m.g	I
OS04G0486400	Oryza sativa	OS04G0486400	D
Pavir.Ga01561	Panicum virgatum	Pavir.Ga01561	I
PDK_20s1345831g002	Phoenix dactylifera	PDK_20s1345831g002	I
PK20543.1	Cannabis sativa	PK20543.1	D
Pm006885	Prunus mume	Pm006885	I
Pm016214	Prunus mume	Pm016214	I
POPTR_0008s17980	Populus trichocarpa	POPTR_0008s17980	I
POPTR_0010s06510	Populus trichocarpa	POPTR_0010s06510	I
PRUPE_ppa005942mg	Prunus persica	PRUPE_ppa005942mg	I
PRUPE_ppa009404mg	Prunus persica	PRUPE_ppa009404mg	I
SapurV1A.0206s0170	Salix purpurea	SapurV1A.0206s0170	I
SapurV1A.1719s0020	Salix purpurea	SapurV1A.1719s0020	I
GT-1	Arabidopsis lyrata	scaffold_101505.1	D
Si010147m.g	Setaria italica	Si010147m.g	I
Si036121m.g	Setaria italica	Si036121m.g	I
Solyc12g077540.1	Solanum lycopersicum	Solyc12g077540.1	I
TCM_010751	Theobroma cacao	TCM_010751	I
Thhalv10004359m.g	Eutrema salsugineum	Thhalv10004359m.g	I
Thhalv10007959m.g	Eutrema salsugineum	Thhalv10007959m.g	I
VIT_01s0010g02420	Vitis vinifera	VIT_01s0010g02420	I
VIT_14s0171g00450	Vitis vinifera	VIT_14s0171g00450	I
VIT_17s0000g10420	Vitis vinifera	VIT_17s0000g10420	D

OB08G28690 (Oryza brachyantha) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1565 Related TFs

OB08G28690 **(Oryza brachyantha)
AP2**