Solyc08g007820.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc08g007820.1 T005497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.739 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.739 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.739 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.739 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.739 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.739 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.731 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.731 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.731 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.731 0.780
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.711 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.702 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.702 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.701 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.701 0.760
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.695 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.695 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.695 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g007820.1.1 AP2 49 100

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003394 Ricinus communis 29889.m003394 N
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N
AT3G17450 Arabidopsis thaliana AT3G17450 N
Bo00763s120 Brassica oleracea Bo00763s120 N
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N
Carubv10013083m.g Capsella rubella Carubv10013083m.g N
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N
Cucsa.252180 Cucumis sativus Cucsa.252180 N
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N
gene22812-v1.0-hybrid Fragaria vesca gene22812-v1.0-hybrid N
GLYMA09G09291 Glycine max GLYMA09G09291 N
GLYMA15G21351 Glycine max GLYMA15G21351 N
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N
MDP0000133479 Malus domestica MDP0000133479 N
MDP0000314867 Malus domestica MDP0000314867 N
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N
PK21594.1 Cannabis sativa PK21594.1 N
Pm008491 Prunus mume Pm008491 N
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N
TCM_004927 Theobroma cacao TCM_004927 N
TCM_021492 Theobroma cacao TCM_021492 N
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N