cassava16948.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava16948.m1 T006816_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.812 0.940
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.806 0.820
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.799 0.800
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.779 0.860
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.779 0.860
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.779 0.860
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.768 0.760
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.768 0.760
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.759 0.900
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.759 0.900
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.757 0.760
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.757 0.760
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.757 0.760
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.746 0.740
ERF109
M00849_2.00 		Arabidopsis thaliana
NGCCGNHNN
NNDNCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RRTF1 		0.737 0.720
ERF109
M06653_2.00 		Arabidopsis thaliana
CKSCGCCGYHWHHNN
NNDDWDRCGGCGSMG		 Dap-seq
OMalley et al.(2016)
RRTF1_col_a 		0.737 0.720
ERF109
M06654_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYHWTHNNN
NNNDAWDRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
RRTF1_colamp_a 		0.737 0.720
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.726 0.760
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.722 0.720
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.722 0.720
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.722 0.720
ERF5_TOBAC
M09729_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF4_02 		0.718 0.720
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.710 0.700
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.710 0.720
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.710 0.720
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.709 0.740
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.709 0.740
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.709 0.740
PK02330.1
M01095_2.00 		Cannabis sativa
NNNGCCGBCN
NGVCGGCNNN		 PBM
Lambert et al.(2019)
pTH10093 		0.706 0.700
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.706 0.700
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.706 0.700
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.706 0.720
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.705 0.780
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.705 0.780
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.705 0.780
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.705 0.780
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.703 0.720
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.700 0.700
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.696 0.680
A5JTT1_WHEAT
M09700_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_01 		0.695 0.720
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.690 0.700
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.690 0.700
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.689 0.660
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.689 0.660
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.687 0.640
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.683 0.640
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.681 0.720
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.679 0.680
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.679 0.680
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.679 0.680
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.677 0.680
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16948.m1 AP2 5 56

Links

Other AP2 family TFs
Other Manihot esculenta TFs

1490 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000736 Ricinus communis 29814.m000736 I
29970.m000987 Ricinus communis 29970.m000987 I
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
AtMYB70 Arabidopsis thaliana AT2G23290 D
BGIOSGA000003 Oryza indica BGIOSGA000003 N
Bo1g004900 Brassica oleracea Bo1g004900 I
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I
Bra011749 Brassica rapa Bra011749 I
Carubv10023692m.g Capsella rubella Carubv10023692m.g I
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I
Ca_02182 Cicer arietinum Ca_02182 I
Ca_12468 Cicer arietinum Ca_12468 I
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I
Cla004431 Citrullus lanatus Cla004431 I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
Cucsa.368410 Cucumis sativus Cucsa.368410 I
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I
GLYMA01G39740 Glycine max GLYMA01G39740 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
GLYMA11G05550 Glycine max GLYMA11G05550 I
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I
GRMZM2G369799 Zea mays GRMZM2G369799 I
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I
LPERR01G40230 Leersia perrieri LPERR01G40230 I
Lus10007503.g Linum usitatissimum Lus10007503.g I
Lus10010055.g Linum usitatissimum Lus10010055.g I
Lus10010238.g Linum usitatissimum Lus10010238.g I
Lus10010260.g Linum usitatissimum Lus10010260.g I
Lus10028979.g Linum usitatissimum Lus10028979.g I
Lus10030336.g Linum usitatissimum Lus10030336.g I
Lus10040940.g Linum usitatissimum Lus10040940.g I
MDP0000196986 Malus domestica MDP0000196986 I
MDP0000232454 Malus domestica MDP0000232454 I
MDP0000298689 Malus domestica MDP0000298689 I
mgf020432m Mimulus guttatus mgf020432m I
MTR_4g094982 Medicago truncatula MTR_4g094982 I
MTR_5g016510 Medicago truncatula MTR_5g016510 I
OB01G55080 Oryza brachyantha OB01G55080 N
OBART01G45880 Oryza barthii OBART01G45880 N
OGLUM01G50230 Oryza glumaepatula OGLUM01G50230 N
OLONG_011153 Oryza longistaminata OLONG_011153 N
ONIVA01G52120 Oryza nivara ONIVA01G52120 N
OPUNC01G44800 Oryza punctata OPUNC01G44800 N
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I
ORGLA01G0396300 Oryza glaberrima ORGLA01G0396300 N
ORUFI01G49370 Oryza rufipogon ORUFI01G49370 N
OS01G0977300 Oryza sativa OS01G0977300 N
Pavir.Ca02945 Panicum virgatum Pavir.Ca02945 I
Pavir.Cb00156 Panicum virgatum Pavir.Cb00156 I
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I
PK01153.1 Cannabis sativa PK01153.1 I
PK28565.1 Cannabis sativa PK28565.1 D
Pm018951 Prunus mume Pm018951 I
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I
Sb0088s002210 Sorghum bicolor Sb0088s002210 N
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I
TCM_000696 Theobroma cacao TCM_000696 I
TCM_042474 Theobroma cacao TCM_042474 I
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I
Traes_4AS_A79A68739 Triticum aestivum Traes_4AS_A79A68739 N
Traes_4BL_545A5716E Triticum aestivum Traes_4BL_545A5716E I
Traes_4DL_D41CB81EA Triticum aestivum Traes_4DL_D41CB81EA I
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I