cassava18935.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava18935.valid.m1 T006826_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.836 0.980
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.836 0.980
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.797 0.900
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.797 0.900
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.797 0.900
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.775 0.920
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.775 0.920
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.775 0.920
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.775 0.920
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.717 0.820
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.717 0.820
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.711 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.711 0.920
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.704 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.704 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.704 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.704 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.704 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.704 0.780
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.703 0.820
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.702 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.702 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.689 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava18935.valid.m1 AP2 55 106

Links

Other AP2 family TFs
Other Manihot esculenta TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB001247 Anopheles albimanus AALB001247 I
Aan_R006049 Calypte anna Aan_R006049 I
AARA005847 Anopheles arabiensis AARA005847 I
AATE003551 Anopheles atroparvus AATE003551 I
ACHR003306 Anopheles christyi ACHR003306 I
ACOM040804 Anopheles coluzzii ACOM040804 I
ACUA004518 Anopheles culicifacies ACUA004518 I
ACYPI002777 Acyrthosiphon pisum ACYPI002777 I
ACYPI004907 Acyrthosiphon pisum ACYPI004907 I
ADAC005776 Anopheles darlingi ADAC005776 I
AEPI009865 Anopheles epiroticus AEPI009865 I
AFAF003749 Anopheles farauti AFAF003749 I
Afo_R000224 Aptenodytes forsteri Afo_R000224 I
Afo_R012987 Aptenodytes forsteri Afo_R012987 I
AFUN002669 Anopheles funestus AFUN002669 I
AGAP010358 Anopheles gambiae AGAP010358 I
AGAP010359 Anopheles gambiae AGAP010359 I
AMAM004970 Anopheles maculatus AMAM004970 I
AMEC005923 Anopheles melas AMEC005923 I
AMEM003304 Anopheles merus AMEM003304 N
AMEM007650 Anopheles merus AMEM007650 I
AMIN006552 Anopheles minimus AMIN006552 I
AQUA006728 Anopheles quadriannulatus AQUA006728 I
ASIS005037 Anopheles sinensis ASIS005037 I
ASTEI06722 Anopheles stephensi ASTEI06722 I
ASTEI06723 Anopheles stephensi ASTEI06723 I
BGIBMGA009025 Bombyx mori BGIBMGA009025 I
Brh_R006623 Buceros rhinoceros Brh_R006623 I
CapteG44697 Capitella teleta CapteG44697 I
Cflo_06472--XP_394847.3_APIME Camponotus floridanus Cflo_06472--XP_394847.3_APIME I
Cflo_07008--XP_394847.3_APIME Camponotus floridanus Cflo_07008--XP_394847.3_APIME I
CGI_10026438 Crassostrea gigas CGI_10026438 I
CLEC002253 Cimex lectularius CLEC002253 I
CPIJ006496 Culex quinquefasciatus CPIJ006496 I
CpipJ_CPIJ006496 Culex pipiens CpipJ_CPIJ006496 I
DAPPUDRAFT_15023 Daphnia pulex DAPPUDRAFT_15023 I
DAPPUDRAFT_265088 Daphnia pulex DAPPUDRAFT_265088 I
DAPPUDRAFT_334067 Daphnia pulex DAPPUDRAFT_334067 I
DAPPUDRAFT_45999 Daphnia pulex DAPPUDRAFT_45999 I
PAX3 Anolis carolinensis ENSACAG00000004981 I
ENSAMEG00000007444 Ailuropoda melanoleuca ENSAMEG00000007444 I
ENSAMEG00000017082 Ailuropoda melanoleuca ENSAMEG00000017082 I
ENSAMXG00000003799 Astyanax mexicanus ENSAMXG00000003799 I
ENSAMXG00000024811 Astyanax mexicanus ENSAMXG00000024811 I
PAX3 Bos taurus ENSBTAG00000009950 I
PAX7 Bos taurus ENSBTAG00000014967 I
ENSBTAP00000013131-D1 Bos grunniens ENSBTAP00000013131-D1 I
ENSBTAP00000019924-D1 Bos grunniens ENSBTAP00000019924-D1 I
PAX7 Canis familiaris ENSCAFG00000015539 I
PAX3 Canis familiaris ENSCAFG00000016041 I
PAX7 Choloepus hoffmanni ENSCHOG00000005130 I
ENSCING00000005904 Ciona intestinalis ENSCING00000005904 I
PAX7 Callithrix jacchus ENSCJAG00000007521 I
PAX3 Callithrix jacchus ENSCJAG00000012088 I
PAX3 Cavia porcellus ENSCPOG00000006276 I
PAX7 Cavia porcellus ENSCPOG00000014574 I
ENSCSAG00000000870 Chlorocebus sabaeus ENSCSAG00000000870 I
ENSCSAG00000007841 Chlorocebus sabaeus ENSCSAG00000007841 I
ENSCSAVG00000004794 Ciona savignyi ENSCSAVG00000004794 I
pax3a Danio rerio ENSDARG00000010192 I
pax3b Danio rerio ENSDARG00000028348 I
pax7b Danio rerio ENSDARG00000070818 I
pax7a Danio rerio ENSDARG00000100398 I
PAX3 Dasypus novemcinctus ENSDNOG00000001871 I
PAX7 Dasypus novemcinctus ENSDNOG00000007584 I
PAX3 Equus caballus ENSECAG00000014549 I
PAX3 Erinaceus europaeus ENSEEUG00000012346 I
PAX3 Echinops telfairi ENSETEG00000006800 I
ENSFALG00000006722 Ficedula albicollis ENSFALG00000006722 I
ENSFALG00000012312 Ficedula albicollis ENSFALG00000012312 I
PAX7 Felis catus ENSFCAG00000008765 I
PAX3 Felis catus ENSFCAG00000018967 I
PAX7 Homo sapiens ENSG00000009709 D
PAX3 Homo sapiens ENSG00000135903 D
PAX7 Gasterosteus aculeatus ENSGACG00000001703 I
pax7a Gasterosteus aculeatus ENSGACG00000012890 I
pax3b Gasterosteus aculeatus ENSGACG00000014017 I
ENSGALG00000003782 Gallus gallus ENSGALG00000003782 I
ENSGALG00000005246 Gallus gallus ENSGALG00000005246 I
PAX7 Gorilla gorilla ENSGGOG00000004213 I
PAX3 Gorilla gorilla ENSGGOG00000015636 I
ENSGMOG00000001549 Gadus morhua ENSGMOG00000001549 I
ENSGMOG00000006159 Gadus morhua ENSGMOG00000006159 I
ENSGMOG00000013066 Gadus morhua ENSGMOG00000013066 I
ENSLACG00000006342 Latimeria chalumnae ENSLACG00000006342 I
ENSLACG00000019159 Latimeria chalumnae ENSLACG00000019159 I
PAX3 Loxodonta africana ENSLAFG00000008041 I
PAX7 Loxodonta africana ENSLAFG00000011762 I
ENSLOCG00000003864 Lepisosteus oculatus ENSLOCG00000003864 I
ENSLOCG00000004189 Lepisosteus oculatus ENSLOCG00000004189 I
ENSMEUG00000001822 Macropus eugenii ENSMEUG00000001822 I
ENSMEUG00000013628 Macropus eugenii ENSMEUG00000013628 I
PAX7 Meleagris gallopavo ENSMGAG00000005870 I
PAX3 Microcebus murinus ENSMICG00000000336 I
PAX7 Microcebus murinus ENSMICG00000016256 I
PAX3 Myotis lucifugus ENSMLUG00000014155 I
PAX7 Macaca mulatta ENSMMUG00000017444 I
PAX3 Macaca mulatta ENSMMUG00000020409 I
PAX3 Monodelphis domestica ENSMODG00000021190 I
ENSMPUG00000016202 Mustela putorius furo ENSMPUG00000016202 I
ENSMPUG00000016673 Mustela putorius furo ENSMPUG00000016673 I
Pax3 Mus musculus ENSMUSG00000004872 I
Pax7 Mus musculus ENSMUSG00000028736 D
ENSNLEG00000007812 Nomascus leucogenys ENSNLEG00000007812 I
ENSNLEG00000009611 Nomascus leucogenys ENSNLEG00000009611 I
PAX3 Ornithorhynchus anatinus ENSOANG00000007096 I
ENSOARG00000010587 Ovis aries ENSOARG00000010587 I
ENSOARG00000020289 Ovis aries ENSOARG00000020289 I
PAX7 Oryctolagus cuniculus ENSOCUG00000006146 I
PAX3 Oryctolagus cuniculus ENSOCUG00000017507 I
PAX3 Otolemur garnettii ENSOGAG00000001304 I
PAX7 Otolemur garnettii ENSOGAG00000016376 I
ENSONIG00000001596 Oreochromis niloticus ENSONIG00000001596 I
ENSONIG00000010028 Oreochromis niloticus ENSONIG00000010028 I
ENSONIG00000014283 Oreochromis niloticus ENSONIG00000014283 I
ENSONIG00000014632 Oreochromis niloticus ENSONIG00000014632 I
PAX7 Ochotona princeps ENSOPRG00000007352 I
PAX7 Oryzias latipes ENSORLG00000004269 I
PAX3 Oryzias latipes ENSORLG00000009031 I
PAX3 Oryzias latipes ENSORLG00000015932 I
ENSP00000364524 Macaca fascicularis ENSP00000364524 I
ENSP00000375921 Macaca fascicularis ENSP00000375921 I
ENSPANG00000008818 Papio anubis ENSPANG00000008818 I
ENSPANG00000015169 Papio anubis ENSPANG00000015169 I
PAX3 Procavia capensis ENSPCAG00000000403 I
ENSPFOG00000007769 Poecilia formosa ENSPFOG00000007769 I
ENSPFOG00000013988 Poecilia formosa ENSPFOG00000013988 I
ENSPFOG00000014283 Poecilia formosa ENSPFOG00000014283 I
ENSPFOG00000016934 Poecilia formosa ENSPFOG00000016934 I
ENSPPYG00000001801 Pongo abelii ENSPPYG00000001801 I
ENSPPYG00000013219 Pongo abelii ENSPPYG00000013219 I
ENSPSIG00000005535 Pelodiscus sinensis ENSPSIG00000005535 I
PAX7 Pan troglodytes ENSPTRG00000000253 I
PAX3 Pan troglodytes ENSPTRG00000012969 I
PAX3 Pteropus vampyrus ENSPVAG00000007498 I
Pax3 Rattus norvegicus ENSRNOG00000013670 I
Pax7 Rattus norvegicus ENSRNOG00000018739 I
PAX7 Sorex araneus ENSSARG00000008062 I
ENSSHAG00000005424 Sarcophilus harrisii ENSSHAG00000005424 I
ENSSHAG00000016542 Sarcophilus harrisii ENSSHAG00000016542 I
PAX3 Sus scrofa ENSSSCG00000028418 I
ENSSTOG00000008650 Ictidomys tridecemlineatus ENSSTOG00000008650 I
ENSSTOG00000020868 Ictidomys tridecemlineatus ENSSTOG00000020868 I
PAX3 Tupaia belangeri ENSTBEG00000010268 I
PAX3 Taeniopygia guttata ENSTGUG00000007761 I
PAX3 Tetraodon nigroviridis ENSTNIG00000014313 I
pax7a Tetraodon nigroviridis ENSTNIG00000014797 I
PAX3 Tetraodon nigroviridis ENSTNIG00000015279 I
PAX3 Takifugu rubripes ENSTRUG00000009198 I
PAX3 Takifugu rubripes ENSTRUG00000013444 I
pax7a Takifugu rubripes ENSTRUG00000015245 I
ENSTSYG00000009638 Tarsius syrichta ENSTSYG00000009638 I
PAX3 Tursiops truncatus ENSTTRG00000000379 I
PAX7 Tursiops truncatus ENSTTRG00000004465 I
ENSVPAG00000012251 Vicugna pacos ENSVPAG00000012251 I
ENSXMAG00000008304 Xiphophorus maculatus ENSXMAG00000008304 I
ENSXMAG00000012884 Xiphophorus maculatus ENSXMAG00000012884 I
ENSXMAG00000015270 Xiphophorus maculatus ENSXMAG00000015270 I
gsb-n Drosophila melanogaster FBgn0001147 D
gsb Drosophila melanogaster FBgn0001148 D
prd Drosophila melanogaster FBgn0003145 D
GA15432 Drosophila pseudoobscura FBgn0075449 I
GA17419 Drosophila pseudoobscura FBgn0077432 I
GA19807 Drosophila pseudoobscura FBgn0079803 I
GF11512 Drosophila ananassae FBgn0088552 I
GF13361 Drosophila ananassae FBgn0090393 I
GF23439 Drosophila ananassae FBgn0100433 I
GG10275 Drosophila erecta FBgn0102584 I
GG19864 Drosophila erecta FBgn0112065 I
GG23031 Drosophila erecta FBgn0115188 I
GH10195 Drosophila grimshawi FBgn0117676 I
GH22657 Drosophila grimshawi FBgn0130115 I
GH23137 Drosophila grimshawi FBgn0130594 I
GI14821 Drosophila mojavensis FBgn0137572 I
GI18478 Drosophila mojavensis FBgn0141217 I
GI21167 Drosophila mojavensis FBgn0143898 I
GL16831 Drosophila persimilis FBgn0154435 I
GL17644 Drosophila persimilis FBgn0155247 I
GM11765 Drosophila sechellia FBgn0166708 I
GM11922 Drosophila sechellia FBgn0166863 I
GM26340 Drosophila sechellia FBgn0181193 I
GD11918 Drosophila simulans FBgn0183657 I
GD22133 Drosophila simulans FBgn0193543 I
GD24898 Drosophila simulans FBgn0196214 I
GJ21022 Drosophila virilis FBgn0208157 I
GJ21339 Drosophila virilis FBgn0208469 I
GJ23973 Drosophila virilis FBgn0211060 I
GK21081 Drosophila willistoni FBgn0223073 I
GK21576 Drosophila willistoni FBgn0223568 I
GK21727 Drosophila willistoni FBgn0223712 I
GE11387 Drosophila yakuba FBgn0229199 I
GE12435 Drosophila yakuba FBgn0230178 I
GE14464 Drosophila yakuba FBgn0232069 I
fgenesh2_kg.scaffold_211000002 Branchiostoma floridae fgenesh2_kg.scaffold_211000002 I
fgenesh2_kg.scaffold_259000002 Branchiostoma floridae fgenesh2_kg.scaffold_259000002 I
GB43792 Apis mellifera GB43792 I
GB43794 Apis mellifera GB43794 I
GB54180 Apis mellifera GB54180 I
Gfo_R008876 Geospiza fortis Gfo_R008876 I
HelroG185509 Helobdella robusta HelroG185509 I
HelroG92410 Helobdella robusta HelroG92410 I
HMEL015047 Heliconius melpomene HMEL015047 I
HMEL015048 Heliconius melpomene HMEL015048 I
Hsal_04609--XP_394847.3_APIME Harpegnathos saltator Hsal_04609--XP_394847.3_APIME I
Hsal_08388--XP_394847.3_APIME Harpegnathos saltator Hsal_08388--XP_394847.3_APIME I
Hsal_08389--XP_394848.3_APIME Harpegnathos saltator Hsal_08389--XP_394848.3_APIME I
ISCW014979 Ixodes scapularis ISCW014979 I
KGM_11699 Danaus plexippus KGM_11699 I
LCUP011795 Lucilia cuprina LCUP011795 I
LDEC019773 Leptinotarsa decemlineata LDEC019773 I
LLOJ009941 Lutzomyia longipalpis LLOJ009941 I
LotgiG142778 Lottia gigantea LotgiG142778 I
MCINX015564 Melitaea cinxia MCINX015564 I
MCINX015565 Melitaea cinxia MCINX015565 I
MDOA002110 Musca domestica MDOA002110 I
MDOA004461 Musca domestica MDOA004461 I
MDOA008527 Musca domestica MDOA008527 I
Myotis_brandtii_Pax3_10032963 Myotis brandtii Myotis_brandtii_Pax3_10032963 I
Myotis_brandtii_Pax7_10009014 Myotis brandtii Myotis_brandtii_Pax7_10009014 I
NV18360 Nasonia vitripennis NV18360 I
PHUM134580 Pediculus humanus PHUM134580 I
PHUM375940 Pediculus humanus PHUM375940 I
PPAI006228 Phlebotomus papatasi PPAI006228 I
Pvit_06262 Pogona vitticeps Pvit_06262 I
Pvit_18803 Pogona vitticeps Pvit_18803 I
SINV13311 Solenopsis invicta SINV13311 I
SINV15888 Solenopsis invicta SINV15888 I
TC005342 Tribolium castaneum TC005342 I
TC006788 Tribolium castaneum TC006788 I
TC015804 Tribolium castaneum TC015804 I
tetur07g04480 Tetranychus urticae tetur07g04480 I
tetur29g00530 Tetranychus urticae tetur29g00530 I
pax3 Xenopus tropicalis XB-GENE-482740 I
pax3.S Xenopus laevis XB-GENE-482744 I
pax7 Xenopus tropicalis XB-GENE-487140 I
pax3.L Xenopus laevis XB-GENE-6252072 I
pax7.L Xenopus laevis XB-GENE-865678 I
YQE_10902 Dendroctonus ponderosae YQE_10902 I