Gorai.010G021900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.010G021900 T008665_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.780 0.920
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.779 0.880
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.779 0.880
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.778 0.860
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.778 0.860
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.777 0.920
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.777 0.920
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.777 0.920
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.777 0.920
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.777 0.920
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.777 0.920
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.758 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.758 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G021900.1 AP2 79 130

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28718.m000038 Ricinus communis 28718.m000038 I 0.791
30170.m013843 Ricinus communis 30170.m013843 I 0.798
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.693
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.800
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.798
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.777
ERF008 Arabidopsis thaliana AT2G23340 D 0.777
ERF011 Arabidopsis thaliana AT3G50260 D 0.778
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.758
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.780
ERF010 Arabidopsis thaliana AT5G67190 D 0.779
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.750
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.750
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.759
Bo1g004940 Brassica oleracea Bo1g004940 I 0.770
Bo4g151460 Brassica oleracea Bo4g151460 I 0.780
Bo7g063980 Brassica oleracea Bo7g063980 I 0.779
Bo7g118430 Brassica oleracea Bo7g118430 I 0.780
Bo8g079660 Brassica oleracea Bo8g079660 I 0.779
Bo9g020380 Brassica oleracea Bo9g020380 I 0.773
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.779
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.822
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.780
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.721
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.741
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.780
Bra011744 Brassica rapa Bra011744 I 0.745
Bra012140 Brassica rapa Bra012140 I 0.768
Bra014056 Brassica rapa Bra014056 I 0.813
Bra017811 Brassica rapa Bra017811 I 0.780
Bra032173 Brassica rapa Bra032173 I 0.780
Bra036061 Brassica rapa Bra036061 I 0.779
Bra037124 Brassica rapa Bra037124 I 0.773
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.759
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.750
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.779
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.778
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.822
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.780
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.780
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.780
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.822
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.778
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.780
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.779
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.766
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.798
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.798
Ca_01556 Cicer arietinum Ca_01556 I 0.751
Ca_02170 Cicer arietinum Ca_02170 I 0.761
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.803
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.791
Cla014175 Citrullus lanatus Cla014175 I 0.745
Cla020550 Citrullus lanatus Cla020550 I 0.740
Cla020961 Citrullus lanatus Cla020961 I 0.813
Cla022937 Citrullus lanatus Cla022937 I 0.807
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.745
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.813
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.740
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.807
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.811
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.797
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.797
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.791
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.780
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.778
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.758
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.807
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.792
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.763
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.784
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.762
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.784
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.763
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.813
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.750
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.807
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.791
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.824
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.791
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.813
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.727
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.750
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.726
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.750
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.786
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.779
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.762
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.740
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.727
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.717
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.730
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.782
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.775
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.763
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.746
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.791
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.750
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.759
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.740
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.800
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.798
MDP0000125673 Malus domestica MDP0000125673 I 0.792
MDP0000179962 Malus domestica MDP0000179962 I 0.792
MDP0000756341 Malus domestica MDP0000756341 I 0.782
mgf000289m Mimulus guttatus mgf000289m I 0.785
mgf006561m Mimulus guttatus mgf006561m I 0.776
mgf021115m Mimulus guttatus mgf021115m I 0.783
mgf025363m Mimulus guttatus mgf025363m I 0.773
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.751
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.792
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.751
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.761
OBART06G04460 Oryza barthii OBART06G04460 I 0.759
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.750
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.759
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.750
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.750
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.759
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.759
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.791
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.803
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.750
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.759
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.759
OS04G0648900 Oryza sativa OS04G0648900 I 0.750
OS06G0166400 Oryza sativa OS06G0166400 I 0.759
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.750
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.759
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.750
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.759
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.781
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.785
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.770
PK15612.1 Cannabis sativa PK15612.1 I 0.802
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.798
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.766
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.766
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.798
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.788
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.790
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.800
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.798
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.766
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.752
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.752
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.798
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.750
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.759
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.779
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.780
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.779
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.785
TCM_000669 Theobroma cacao TCM_000669 I 0.791
TCM_033791 Theobroma cacao TCM_033791 I 0.811
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.738
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.779
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.780
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.766
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.751
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.752
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.756