Bostr.12302s0138 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.12302s0138 T007557_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.782 0.900
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.781 0.900
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.781 0.900
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.781 0.880
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.781 0.880
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.779 0.900
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.779 0.900
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.779 0.900
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.779 0.900
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.779 0.960
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.779 0.960
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.760 0.900
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.760 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.12302s0138.1.p AP2 29 80

Links

Other AP2 family TFs
Other Boechera stricta TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.824
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.824
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.822
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.822
Bra014056 Brassica rapa Bra014056 I 0.815
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.815
Cla020961 Citrullus lanatus Cla020961 I 0.815
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.815
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.815
TCM_033791 Theobroma cacao TCM_033791 I 0.813
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.813
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.809
Cla022937 Citrullus lanatus Cla022937 I 0.809
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.809
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.809
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.806
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.806
PK15612.1 Cannabis sativa PK15612.1 I 0.804
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.802
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.802
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.802
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.800
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.800
30170.m013843 Ricinus communis 30170.m013843 I 0.800
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.800
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.800
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.800
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.800
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.800
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.800
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.799
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.799
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.795
MDP0000125673 Malus domestica MDP0000125673 I 0.795
MDP0000179962 Malus domestica MDP0000179962 I 0.795
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.794
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.793
TCM_000669 Theobroma cacao TCM_000669 I 0.793
28718.m000038 Ricinus communis 28718.m000038 I 0.793
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.793
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.793
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.793
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.793
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.793
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.793
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.790
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.789
PGSC0003DMG400007951 Solanum tuberosum PGSC0003DMG400007951 I 0.788
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.788
mgf000289m Mimulus guttatus mgf000289m I 0.788
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.787
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.787
mgf021115m Mimulus guttatus mgf021115m I 0.785
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.784
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.784
MDP0000756341 Malus domestica MDP0000756341 I 0.784
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.782
Bo4g151460 Brassica oleracea Bo4g151460 I 0.782
Bo7g118430 Brassica oleracea Bo7g118430 I 0.782
Bra017811 Brassica rapa Bra017811 I 0.782
Bra032173 Brassica rapa Bra032173 I 0.782
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.782
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.782
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.782
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.782
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.782
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.782
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.782
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.782
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.782
ERF011 Arabidopsis thaliana AT3G50260 D 0.781
ERF010 Arabidopsis thaliana AT5G67190 D 0.781
Bo7g063980 Brassica oleracea Bo7g063980 I 0.781
Bo8g079660 Brassica oleracea Bo8g079660 I 0.781
Bra036061 Brassica rapa Bra036061 I 0.781
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.781
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.781
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.781
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.781
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.781
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.781
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.781
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.781
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.781
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.781
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.779
ERF008 Arabidopsis thaliana AT2G23340 D 0.779
mgf006561m Mimulus guttatus mgf006561m I 0.779
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.777
Bo9g020380 Brassica oleracea Bo9g020380 I 0.775
Bra037124 Brassica rapa Bra037124 I 0.775
mgf025363m Mimulus guttatus mgf025363m I 0.775
Bo1g004940 Brassica oleracea Bo1g004940 I 0.773
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.772
Bra012140 Brassica rapa Bra012140 I 0.770
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.768
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.768
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.768
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.768
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.768
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.765
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.765
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.765
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.764
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.764
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.763
Ca_02170 Cicer arietinum Ca_02170 I 0.763
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.762
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.762
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.762
OBART06G04460 Oryza barthii OBART06G04460 I 0.762
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.762
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.762
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.762
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.762
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.762
OS06G0166400 Oryza sativa OS06G0166400 I 0.762
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.762
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.762
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.762
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.760
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.760
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.758
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.754
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.754
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.754
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.753
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.753
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.753
Ca_01556 Cicer arietinum Ca_01556 I 0.753
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.752
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.752
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.752
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.752
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.752
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.752
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.752
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.752
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.752
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.752
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.752
OS04G0648900 Oryza sativa OS04G0648900 I 0.752
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.752
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.752
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.752
Bra011744 Brassica rapa Bra011744 I 0.748
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.748
Cla014175 Citrullus lanatus Cla014175 I 0.747
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.747
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.743
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.742
Cla020550 Citrullus lanatus Cla020550 I 0.742
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.742
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.742
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.740
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.732
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.729
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.729
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.728
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.723
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.720
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.695