PGSC0003DMG400007951 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400007951 T004366_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-10
M00850_2.00 		Arabidopsis thaliana
NNRCCGHCNN
NNGDCGGYNN		 PBM
Franco-Zorrilla et al.(2014)
DEAR4 		0.788 0.940
ERF010
M06690_2.00 		Arabidopsis thaliana
HHNHHDYCACCGHCD
HGDCGGTGRHDDNDD		 Dap-seq
OMalley et al.(2016)
DEAR2_col_a 		0.787 0.900
ERF010
M06691_2.00 		Arabidopsis thaliana
NNNHDBCACCGACAH
DTGTCGGTGVHDNNN		 Dap-seq
OMalley et al.(2016)
DEAR2_colamp_a 		0.787 0.900
ERF011
M06628_2.00 		Arabidopsis thaliana
YHNHHDYCACCGHCN
NGDCGGTGRHDDNDR		 Dap-seq
OMalley et al.(2016)
CEJ1_col_a 		0.786 0.880
ERF011
M06629_2.00 		Arabidopsis thaliana
NDNCACCGACMHH
DDKGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
CEJ1_colamp_a 		0.786 0.880
ERF008
M00844_2.00 		Arabidopsis thaliana
SHRCCGHC
GDCGGYDS		 PBM
Franco-Zorrilla et al.(2014)
DEAR3 		0.779 0.920
ERF008
M01048_2.00 		Arabidopsis thaliana
CRCCGMCN
NGKCGGYG		 PBM
Sullivan et al.(2014)
pTH7672 		0.779 0.920
ERF008
M06602_2.00 		Arabidopsis thaliana
NNNNNBCACCGACAHHN
NDDTGTCGGTGVNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR3_col_a 		0.779 0.920
ERF008
M06603_2.00 		Arabidopsis thaliana
NNBCACCGACAWH
DWTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
DEAR3_colamp_a 		0.779 0.920
RAP2-9
M06633_2.00 		Arabidopsis thaliana
NNNNNNNDBCACCGACMHH
DDKGTCGGTGVHNNNNNNN		 Dap-seq
OMalley et al.(2016)
DEAR5_col_a 		0.759 0.920
RAP2-9
M06634_2.00 		Arabidopsis thaliana
NCACCGACMHH
DDKGTCGGTGN		 Dap-seq
OMalley et al.(2016)
DEAR5_colamp_a 		0.759 0.920
RAP2-1
M06582_2.00 		Arabidopsis thaliana
NHDYCRCCGMCAH
DTGKCGGYGRHDN		 Dap-seq
OMalley et al.(2016)
RAP21_col_a 		0.743 0.880
RAP2-1
M06583_2.00 		Arabidopsis thaliana
NHDBCACCGACAHHDNNNNN
NNNNNHDDTGTCGGTGVHDN		 Dap-seq
OMalley et al.(2016)
RAP21_colamp_a 		0.743 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400020525 AP2 16 67

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc04g078640.1 Solanum lycopersicum Solyc04g078640.1 I 0.819
mgf000289m Mimulus guttatus mgf000289m I 0.819
Aquca_007_00717 Aquilegia coerulea Aquca_007_00717 I 0.808
Lus10010043.g Linum usitatissimum Lus10010043.g I 0.808
SapurV1A.0167s0190 Salix purpurea SapurV1A.0167s0190 I 0.808
mgf025363m Mimulus guttatus mgf025363m I 0.807
POPTR_0002s12550 Populus trichocarpa POPTR_0002s12550 I 0.806
POPTR_0014s02530 Populus trichocarpa POPTR_0014s02530 I 0.806
30170.m013843 Ricinus communis 30170.m013843 I 0.806
cassava47353.m1 Manihot esculenta cassava47353.m1 I 0.806
cassava9153.m1 Manihot esculenta cassava9153.m1 I 0.806
Aquca_010_00625 Aquilegia coerulea Aquca_010_00625 I 0.806
Lus10018727.g Linum usitatissimum Lus10018727.g I 0.806
SapurV1A.0423s0180 Salix purpurea SapurV1A.0423s0180 I 0.806
SapurV1A.2355s0030 Salix purpurea SapurV1A.2355s0030 I 0.806
gene23873-v1.0-hybrid Fragaria vesca gene23873-v1.0-hybrid I 0.800
MDP0000125673 Malus domestica MDP0000125673 I 0.800
MDP0000179962 Malus domestica MDP0000179962 I 0.800
TCM_000669 Theobroma cacao TCM_000669 I 0.799
28718.m000038 Ricinus communis 28718.m000038 I 0.799
Ciclev10026687m.g Citrus clementina Ciclev10026687m.g I 0.799
Eucgr.H02094 Eucalyptus grandis Eucgr.H02094 I 0.799
Gorai.003G026100 Gossypium raimondii Gorai.003G026100 I 0.799
Gorai.008G077900 Gossypium raimondii Gorai.008G077900 I 0.799
orange1.1g031669m.g Citrus sinensis orange1.1g031669m.g I 0.799
Bra014056 Brassica rapa Bra014056 I 0.798
GLYMA14G09320 Glycine max GLYMA14G09320 I 0.798
PRUPE_ppa012516mg Prunus persica PRUPE_ppa012516mg I 0.798
Cla020961 Citrullus lanatus Cla020961 I 0.798
Cucsa.352470 Cucumis sativus Cucsa.352470 I 0.798
Eucgr.F02317 Eucalyptus grandis Eucgr.F02317 I 0.798
Eucgr.F02319 Eucalyptus grandis Eucgr.F02319 I 0.798
Gorai.009G214300 Gossypium raimondii Gorai.009G214300 I 0.798
TCM_033791 Theobroma cacao TCM_033791 I 0.796
Eucgr.F00192 Eucalyptus grandis Eucgr.F00192 I 0.796
GSMUA_Achr3G13190_001 Musa acuminata GSMUA_Achr3G13190_001 I 0.794
GLYMA17G35860 Glycine max GLYMA17G35860 I 0.792
Cla022937 Citrullus lanatus Cla022937 I 0.792
Cucsa.395960 Cucumis sativus Cucsa.395960 I 0.792
gene09137-v1.0-hybrid Fragaria vesca gene09137-v1.0-hybrid I 0.792
mgf021115m Mimulus guttatus mgf021115m I 0.791
GSMUA_AchrUn_randomG12040_001 Musa acuminata GSMUA_AchrUn_randomG12040_001 I 0.790
PGSC0003DMG400004005 Solanum tuberosum PGSC0003DMG400004005 I 0.789
Ciclev10002733m.g Citrus clementina Ciclev10002733m.g I 0.789
orange1.1g041516m.g Citrus sinensis orange1.1g041516m.g I 0.789
RAP2-10 Arabidopsis thaliana AT4G36900 D 0.788
Bo4g151460 Brassica oleracea Bo4g151460 I 0.788
Bo7g118430 Brassica oleracea Bo7g118430 I 0.788
Bra017811 Brassica rapa Bra017811 I 0.788
Bra032173 Brassica rapa Bra032173 I 0.788
DEAR3 Arabidopsis lyrata fgenesh2_kg.4__264__AT2G23340.1 I 0.788
RAP2.10 Arabidopsis lyrata scaffold_700370.1 I 0.788
Bostr.12302s0138 Boechera stricta Bostr.12302s0138 I 0.788
Bostr.27895s0153 Boechera stricta Bostr.27895s0153 I 0.788
Bostr.7867s1581 Boechera stricta Bostr.7867s1581 I 0.788
Cagra.1735s0005 Capsella grandiflora Cagra.1735s0005 I 0.788
Cagra.29993s0001 Capsella grandiflora Cagra.29993s0001 I 0.788
Cagra.4909s0050 Capsella grandiflora Cagra.4909s0050 I 0.788
Carubv10005767m.g Capsella rubella Carubv10005767m.g I 0.788
Carubv10010891m.g Capsella rubella Carubv10010891m.g I 0.788
Carubv10024198m.g Capsella rubella Carubv10024198m.g I 0.788
Thhalv10026288m.g Eutrema salsugineum Thhalv10026288m.g I 0.788
ERF010 Arabidopsis thaliana AT5G67190 D 0.787
Bo7g063980 Brassica oleracea Bo7g063980 I 0.787
Bo8g079660 Brassica oleracea Bo8g079660 I 0.787
Bra036061 Brassica rapa Bra036061 I 0.787
MTR_1g019110 Medicago truncatula MTR_1g019110 I 0.787
DEAR2 Arabidopsis lyrata scaffold_803390.1 I 0.787
Bostr.0568s0141 Boechera stricta Bostr.0568s0141 I 0.787
Cagra.0342s0005 Capsella grandiflora Cagra.0342s0005 I 0.787
Carubv10027999m.g Capsella rubella Carubv10027999m.g I 0.787
Thhalv10004985m.g Eutrema salsugineum Thhalv10004985m.g I 0.787
PK15612.1 Cannabis sativa PK15612.1 I 0.787
ERF011 Arabidopsis thaliana AT3G50260 D 0.786
CEJ1 Arabidopsis lyrata fgenesh2_kg.5__1372__AT3G50260.1 I 0.786
GLYMA04G04355 Glycine max GLYMA04G04355 I 0.786
GLYMA06G04490 Glycine max GLYMA06G04490 I 0.786
Cagra.0706s0004 Capsella grandiflora Cagra.0706s0004 I 0.786
Carubv10018162m.g Capsella rubella Carubv10018162m.g I 0.786
mgf006561m Mimulus guttatus mgf006561m I 0.785
Gorai.003G099700 Gossypium raimondii Gorai.003G099700 I 0.785
Gorai.010G021900 Gossypium raimondii Gorai.010G021900 I 0.785
SapurV1A.1340s0030 Salix purpurea SapurV1A.1340s0030 I 0.785
SapurV1A.1616s0040 Salix purpurea SapurV1A.1616s0040 I 0.785
GSMUA_AchrUn_randomG26940_001 Musa acuminata GSMUA_AchrUn_randomG26940_001 I 0.783
Bo9g020380 Brassica oleracea Bo9g020380 I 0.781
Bra037124 Brassica rapa Bra037124 I 0.781
ERF008 Arabidopsis thaliana AT2G23340 D 0.779
Bo1g004940 Brassica oleracea Bo1g004940 I 0.779
Cla014175 Citrullus lanatus Cla014175 I 0.779
Cucsa.102560 Cucumis sativus Cucsa.102560 I 0.779
GSMUA_Achr4G20280_001 Musa acuminata GSMUA_Achr4G20280_001 I 0.777
LjSGA_134387.1 Lotus japonicus LjSGA_134387.1 I 0.776
POPTR_0005s18430 Populus trichocarpa POPTR_0005s18430 I 0.774
POPTR_0007s10750 Populus trichocarpa POPTR_0007s10750 I 0.774
cassava17493.valid.m1 Manihot esculenta cassava17493.valid.m1 I 0.774
Lus10009373.g Linum usitatissimum Lus10009373.g I 0.774
SapurV1A.0689s0100 Salix purpurea SapurV1A.0689s0100 I 0.774
LjSGA_007705.1 Lotus japonicus LjSGA_007705.1 I 0.774
PRUPE_ppa012302mg Prunus persica PRUPE_ppa012302mg I 0.773
GLYMA01G39540 Glycine max GLYMA01G39540 I 0.771
GLYMA11G05700 Glycine max GLYMA11G05700 I 0.771
LjSGA_004289.2 Lotus japonicus LjSGA_004289.2 I 0.771
GLYMA05G19050 Glycine max GLYMA05G19050 I 0.770
GSMUA_Achr5G22190_001 Musa acuminata GSMUA_Achr5G22190_001 I 0.770
MTR_5g016750 Medicago truncatula MTR_5g016750 I 0.769
Ca_02170 Cicer arietinum Ca_02170 I 0.769
BGIOSGA022380 Oryza indica BGIOSGA022380 I 0.767
BRADI1G48320 Brachypodium distachyon BRADI1G48320 I 0.767
LPERR06G04000 Leersia perrieri LPERR06G04000 I 0.767
OBART06G04460 Oryza barthii OBART06G04460 I 0.767
OGLUM06G04560 Oryza glumaepatula OGLUM06G04560 I 0.767
ONIVA06G05630 Oryza nivara ONIVA06G05630 I 0.767
OPUNC06G04240 Oryza punctata OPUNC06G04240 I 0.767
ORGLA06G0041000 Oryza glaberrima ORGLA06G0041000 I 0.767
ORUFI06G04420 Oryza rufipogon ORUFI06G04420 I 0.767
OS06G0166400 Oryza sativa OS06G0166400 I 0.767
Sb10g004580 Sorghum bicolor Sb10g004580 I 0.767
MDP0000756341 Malus domestica MDP0000756341 I 0.767
Pavir.J20437 Panicum virgatum Pavir.J20437 I 0.767
Pavir.J34361 Panicum virgatum Pavir.J34361 I 0.767
Bra012140 Brassica rapa Bra012140 I 0.766
VIT_18s0001g10150 Vitis vinifera VIT_18s0001g10150 I 0.764
Cla020550 Citrullus lanatus Cla020550 I 0.763
Cucsa.367300 Cucumis sativus Cucsa.367300 I 0.763
VIT_07s0031g00190 Vitis vinifera VIT_07s0031g00190 I 0.760
RAP2-9 Arabidopsis thaliana AT4G06746 D 0.759
RAP2.9 Arabidopsis lyrata fgenesh2_kg.6__2823__AT4G06746.1 I 0.759
GLYMA17G18580 Glycine max GLYMA17G18580 I 0.758
PGSC0003DMG400034101 Solanum tuberosum PGSC0003DMG400034101 I 0.755
Bra011744 Brassica rapa Bra011744 I 0.754
MLOC_81350 Hordeum vulgare MLOC_81350 I 0.753
Traes_2BL_1E57B73B21 Triticum aestivum Traes_2BL_1E57B73B21 I 0.753
BGIOSGA014220 Oryza indica BGIOSGA014220 I 0.752
BGIOSGA014221 Oryza indica BGIOSGA014221 I 0.752
BRADI5G24110 Brachypodium distachyon BRADI5G24110 I 0.752
GRMZM2G174917 Zea mays GRMZM2G174917 I 0.752
GRMZM2G421033 Zea mays GRMZM2G421033 I 0.752
LPERR04G23120 Leersia perrieri LPERR04G23120 I 0.752
OGLUM04G27370 Oryza glumaepatula OGLUM04G27370 I 0.752
OMERI04G22870 Oryza meridionalis OMERI04G22870 I 0.752
ONIVA04G25910 Oryza nivara ONIVA04G25910 I 0.752
ORGLA04G0237600 Oryza glaberrima ORGLA04G0237600 I 0.752
OS04G0648900 Oryza sativa OS04G0648900 I 0.752
Sb06g030660 Sorghum bicolor Sb06g030660 I 0.752
Pavir.J04844 Panicum virgatum Pavir.J04844 I 0.752
Pavir.J27349 Panicum virgatum Pavir.J27349 I 0.752
Thhalv10029052m.g Eutrema salsugineum Thhalv10029052m.g I 0.751
Bostr.6864s0220 Boechera stricta Bostr.6864s0220 I 0.749
MTR_3g102100 Medicago truncatula MTR_3g102100 I 0.746
Ca_01556 Cicer arietinum Ca_01556 I 0.746
Thhalv10000354m.g Eutrema salsugineum Thhalv10000354m.g I 0.746
RAP2.1 Arabidopsis lyrata scaffold_104275.1 I 0.745
RAP2-1 Arabidopsis thaliana AT1G46768 D 0.743
GSMUA_Achr7G05410_001 Musa acuminata GSMUA_Achr7G05410_001 I 0.738
GSMUA_Achr9G11310_001 Musa acuminata GSMUA_Achr9G11310_001 I 0.738
GRMZM2G119865 Zea mays GRMZM2G119865 I 0.735
GSMUA_Achr7G20800_001 Musa acuminata GSMUA_Achr7G20800_001 I 0.735
GRMZM2G301860 Zea mays GRMZM2G301860 I 0.734
GSMUA_Achr8G15640_001 Musa acuminata GSMUA_Achr8G15640_001 I 0.726
Bostr.3877s0058 Boechera stricta Bostr.3877s0058 I 0.723
AMTR_s00051p00204250 Amborella trichopoda AMTR_s00051p00204250 I 0.701