GM16032 (Drosophila sechellia)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 FBgn0170948 T014891_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.785 1.000
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.785 1.000
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.785 1.000
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.785 1.000
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.762 0.756
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.706 0.837
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.706 0.837
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.706 0.837
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.706 0.837
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.706 0.837
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.706 0.826
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.682 0.733
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.670 0.512
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.644 0.791
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.541 0.395
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0197509 ARID/BRIGHT 301 387

Links

Other ARID/BRIGHT family TFs
Other Drosophila sechellia TFs

378 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29843.m000288 Ricinus communis 29843.m000288 N
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N
MBD2 Arabidopsis thaliana AT5G35330 N
BGIOSGA029516 Oryza indica BGIOSGA029516 N
Bo8g030620 Brassica oleracea Bo8g030620 N
Bostr.29044s0085 Boechera stricta Bostr.29044s0085 N
Bra038936 Brassica rapa Bra038936 N
cassava11725.valid.m1 Manihot esculenta cassava11725.valid.m1 N
Ca_15552 Cicer arietinum Ca_15552 N
Ca_15553 Cicer arietinum Ca_15553 N
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N
Cla005887 Citrullus lanatus Cla005887 N
Eucgr.C00067 Eucalyptus grandis Eucgr.C00067 N
evm.TU.supercontig_115.32 Carica papaya evm.TU.supercontig_115.32 N
gene12231-v1.0-hybrid Fragaria vesca gene12231-v1.0-hybrid N
GLYMA01G00520 Glycine max GLYMA01G00520 N
GLYMA07G15620 Glycine max GLYMA07G15620 N
Gorai.009G001500 Gossypium raimondii Gorai.009G001500 N
GRMZM2G025095 Zea mays GRMZM2G025095 N
GRMZM2G168269 Zea mays GRMZM2G168269 N
GSMUA_Achr1G23690_001 Musa acuminata GSMUA_Achr1G23690_001 N
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N
LPERR09G11190 Leersia perrieri LPERR09G11190 N
Lus10017146.g Linum usitatissimum Lus10017146.g N
Lus10021593.g Linum usitatissimum Lus10021593.g N
MDP0000222923 Malus domestica MDP0000222923 N
mgf002635m Mimulus guttatus mgf002635m N
MLOC_66533 Hordeum vulgare MLOC_66533 N
MTR_6g093020 Medicago truncatula MTR_6g093020 N
OB09G21610 Oryza brachyantha OB09G21610 N
OGLUM09G15680 Oryza glumaepatula OGLUM09G15680 N
OLONG_025649 Oryza longistaminata OLONG_025649 N
OMERI07G04230 Oryza meridionalis OMERI07G04230 N
ONIVA09G15650 Oryza nivara ONIVA09G15650 N
OPUNC09G13490 Oryza punctata OPUNC09G13490 N
orange1.1g019505m.g Citrus sinensis orange1.1g019505m.g N
ORUFI09G16230 Oryza rufipogon ORUFI09G16230 N
OS09G0494300 Oryza sativa OS09G0494300 N
Pavir.Ba01676 Panicum virgatum Pavir.Ba01676 N
Pavir.J30425 Panicum virgatum Pavir.J30425 N
PDK_20s1621301g001 Phoenix dactylifera PDK_20s1621301g001 N
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N
Pm008965 Prunus mume Pm008965 N
POPTR_0006s07730 Populus trichocarpa POPTR_0006s07730 N
POPTR_0018s14340 Populus trichocarpa POPTR_0018s14340 N
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N
SapurV1A.0001s2550 Salix purpurea SapurV1A.0001s2550 N
Sb02g028780 Sorghum bicolor Sb02g028780 N
MBD02 Arabidopsis lyrata scaffold_703403.1 N
Si030613m.g Setaria italica Si030613m.g N
TCM_039691 Theobroma cacao TCM_039691 N
Thhalv10003457m.g Eutrema salsugineum Thhalv10003457m.g N
Traes_5BL_445FD57BE Triticum aestivum Traes_5BL_445FD57BE N
Traes_5DL_F17F78F73 Triticum aestivum Traes_5DL_F17F78F73 N
MBD02 Vitis vinifera VIT_11s0065g01010 N