Alligator_sinensis_CCG017455.1 (Alligator sinensis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Alligator_sinensis_CCG017455.1 T015856_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.785 1.000
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.785 1.000
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.785 1.000
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.785 1.000
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.632 0.744
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.632 0.744
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.605 0.605
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017455.1 ARID/BRIGHT 487 573

Links

Other ARID/BRIGHT family TFs
Other Alligator sinensis TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG002534.1 Alligator sinensis Alligator_sinensis_CCG002534.1 I 0.000
Cmyd_10003951 Chelonia mydas Cmyd_10003951 I 0.000
ZNF384 Anolis carolinensis ENSACAG00000006099 I 0.000
ENSAMEG00000014121 Ailuropoda melanoleuca ENSAMEG00000014121 I 0.000
ENSAMXG00000014229 Astyanax mexicanus ENSAMXG00000014229 I 0.000
ZNF384 Bos taurus ENSBTAG00000017072 I 0.000
ENSBTAP00000022702-D1 Bos grunniens ENSBTAP00000022702-D1 I 0.000
ZNF384 Canis familiaris ENSCAFG00000014740 I 0.000
ZNF384 Choloepus hoffmanni ENSCHOG00000006697 I 0.000
ZNF384 Callithrix jacchus ENSCJAG00000007944 I 0.000
ZNF384 Cavia porcellus ENSCPOG00000012313 N 0.000
ENSCSAG00000010379 Chlorocebus sabaeus ENSCSAG00000010379 I 0.000
ZNF384 Dasypus novemcinctus ENSDNOG00000003936 I 0.000
ZNF384 Equus caballus ENSECAG00000009490 I 0.000
ZNF384 Erinaceus europaeus ENSEEUG00000012950 I 0.000
ENSFALG00000004741 Ficedula albicollis ENSFALG00000004741 I 0.000
ZNF384 Felis catus ENSFCAG00000006882 I 0.000
ZNF384 Homo sapiens ENSG00000126746 D 0.000
ENSGALG00000014459 Gallus gallus ENSGALG00000014459 N 0.000
ZNF384 Gorilla gorilla ENSGGOG00000016048 I 0.000
ZNF384 Loxodonta africana ENSLAFG00000008381 I 0.000
ENSLOCG00000007968 Lepisosteus oculatus ENSLOCG00000007968 I 0.000
ZNF384 Meleagris gallopavo ENSMGAG00000014101 N 0.000
ZNF384 Myotis lucifugus ENSMLUG00000013771 I 0.000
ZNF384 Macaca mulatta ENSMMUG00000016990 I 0.000
ZNF384 Monodelphis domestica ENSMODG00000018105 I 0.000
ENSMPUG00000016838 Mustela putorius furo ENSMPUG00000016838 I 0.000
Zfp384 Mus musculus ENSMUSG00000038346 I 0.000
ENSNLEG00000004506 Nomascus leucogenys ENSNLEG00000004506 I 0.000
ENSOARG00000007041 Ovis aries ENSOARG00000007041 N 0.000
ZNF384 Oryctolagus cuniculus ENSOCUG00000003747 I 0.000
ZNF384 Otolemur garnettii ENSOGAG00000010052 I 0.000
ENSONIG00000013041 Oreochromis niloticus ENSONIG00000013041 I 0.000
ZNF384 Ochotona princeps ENSOPRG00000003626 I 0.000
ENSP00000380019 Macaca fascicularis ENSP00000380019 I 0.000
ENSPANG00000014845 Papio anubis ENSPANG00000014845 I 0.000
ZNF384 Procavia capensis ENSPCAG00000012951 I 0.000
ENSPFOG00000001513 Poecilia formosa ENSPFOG00000001513 I 0.000
ENSPFOG00000015360 Poecilia formosa ENSPFOG00000015360 I 0.000
ENSPPYG00000004196 Pongo abelii ENSPPYG00000004196 I 0.000
ZNF384 Pan troglodytes ENSPTRG00000004584 I 0.000
ZNF384 Pteropus vampyrus ENSPVAG00000011440 I 0.000
Zfp384 Rattus norvegicus ENSRNOG00000017066 I 0.000
ENSSHAG00000015330 Sarcophilus harrisii ENSSHAG00000015330 I 0.000
ZNF384 Sus scrofa ENSSSCG00000000702 I 0.000
ENSSTOG00000009902 Ictidomys tridecemlineatus ENSSTOG00000009902 I 0.000
ZNF384 Tursiops truncatus ENSTTRG00000011754 I 0.000
ENSXMAG00000016787 Xiphophorus maculatus ENSXMAG00000016787 I 0.000
Myotis_brandtii_ZNF384_10009390 Myotis brandtii Myotis_brandtii_ZNF384_10009390 I 0.000
Ogr07132 Ophisaurus gracilis Ogr07132 N 0.000
Ogr12333 Ophisaurus gracilis Ogr12333 I 0.000
Pvit_12574 Pogona vitticeps Pvit_12574 I 0.000