ENSBTAP00000011354-D1 (Bos grunniens)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 ENSBTAP00000011354-D1 T015893_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.785 1.000
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.785 1.000
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.785 1.000
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.785 1.000
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.785 1.000
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.785 0.988
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.720 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.706 0.837
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.706 0.837
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.706 0.837
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.706 0.837
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.694 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.683 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.554 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.521 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000011354-D1 ARID/BRIGHT 244 330

Links

Other ARID/BRIGHT family TFs
Other Bos grunniens TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FRS7 Arabidopsis thaliana AT3G06250 N
FRS12 Arabidopsis thaliana AT5G18960 N
Bo3g013440 Brassica oleracea Bo3g013440 N
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N
Carubv10000255m.g Capsella rubella Carubv10000255m.g N
Carubv10013017m.g Capsella rubella Carubv10013017m.g N
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N
Cucsa.253860 Cucumis sativus Cucsa.253860 N
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N
GLYMA13G28230 Glycine max GLYMA13G28230 N
GLYMA15G10830 Glycine max GLYMA15G10830 N
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N
MDP0000254218 Malus domestica MDP0000254218 N
MDP0000295749 Malus domestica MDP0000295749 N
mgf010461m Mimulus guttatus mgf010461m N
mgf011099m Mimulus guttatus mgf011099m N
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N
PK22885.1 Cannabis sativa PK22885.1 N
Pm008044 Prunus mume Pm008044 N
POPTR_0008s20380 Populus trichocarpa POPTR_0008s20380 N
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N
TCM_021065 Theobroma cacao TCM_021065 N
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N