Carubv10013017m.g (Capsella rubella)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 Carubv10013017m.g T181272_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013017m FAR1 63 138
Carubv10013017m FAR1 224 300
Carubv10013031m FAR1 44 119
Carubv10013031m FAR1 205 281

Links

Other FAR1 family TFs
Other Capsella rubella TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3793s0006 Capsella grandiflora Cagra.3793s0006 N 1.000
Bostr.2570s0035 Boechera stricta Bostr.2570s0035 N 0.987
FRS7 Arabidopsis thaliana AT3G06250 N 0.980
Thhalv10020128m.g Eutrema salsugineum Thhalv10020128m.g N 0.974
Bostr.26527s0315 Boechera stricta Bostr.26527s0315 N 0.954
Cagra.0263s0023 Capsella grandiflora Cagra.0263s0023 N 0.954
Carubv10000255m.g Capsella rubella Carubv10000255m.g N 0.954
Thhalv10012731m.g Eutrema salsugineum Thhalv10012731m.g N 0.954
FRS12 Arabidopsis thaliana AT5G18960 N 0.948
Bo3g013440 Brassica oleracea Bo3g013440 N 0.941
evm.TU.supercontig_16.55 Carica papaya evm.TU.supercontig_16.55 N 0.844
TCM_021065 Theobroma cacao TCM_021065 N 0.838
Gorai.006G255400 Gossypium raimondii Gorai.006G255400 N 0.830
cassava1998.valid.m1 Manihot esculenta cassava1998.valid.m1 N 0.810
PK22885.1 Cannabis sativa PK22885.1 N 0.804
POPTR_0010s03000 Populus trichocarpa POPTR_0010s03000 N 0.799
PRUPE_ppa001884mg Prunus persica PRUPE_ppa001884mg N 0.791
Pm008044 Prunus mume Pm008044 N 0.791
Ciclev10004376m.g Citrus clementina Ciclev10004376m.g N 0.786
MDP0000295749 Malus domestica MDP0000295749 N 0.786
orange1.1g004138m.g Citrus sinensis orange1.1g004138m.g N 0.786
POPTR_0008s20380 Populus trichocarpa POPTR_0008s20380 N 0.778
MDP0000254218 Malus domestica MDP0000254218 N 0.773
SapurV1A.0407s0270 Salix purpurea SapurV1A.0407s0270 N 0.773
SapurV1A.0152s0560 Salix purpurea SapurV1A.0152s0560 N 0.760
SapurV1A.1026s0020 Salix purpurea SapurV1A.1026s0020 N 0.760
GLYMA13G28230 Glycine max GLYMA13G28230 N 0.753
Cucsa.253860 Cucumis sativus Cucsa.253860 N 0.747
mgf010461m Mimulus guttatus mgf010461m N 0.745
gene06133-v1.0-hybrid Fragaria vesca gene06133-v1.0-hybrid N 0.740
GLYMA15G10830 Glycine max GLYMA15G10830 N 0.727
mgf011099m Mimulus guttatus mgf011099m N 0.719
Solyc10g084220.1 Solanum lycopersicum Solyc10g084220.1 N 0.701