CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10011592m.g
(
Capsella rubella
)
B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02362 (B3)
IPR003340
Carubv10011592m.g
T022857_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G51120
M01696_2.00
Arabidopsis thaliana
NNNNYRNNNN
NNNNYRNNNN
PBM
Weirauch et al.(2014)
pTH8659
0.832
0.832
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011592m
B3
181
287
FQKELTPSDVGKLNRLVIPKKYAVKYMPFISNDHNEKEMGEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFYTCDVPSNAKTLE
Links
Other
B3
family TFs
Other
Capsella rubella
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT1G50680
Arabidopsis thaliana
AT1G50680
I
0.771
AT1G51120
Arabidopsis thaliana
AT1G51120
D
0.823
Bo5g081270
Brassica oleracea
Bo5g081270
I
0.875
Bo6g022280
Brassica oleracea
Bo6g022280
I
0.779
Bo6g022450
Brassica oleracea
Bo6g022450
I
0.798
Bo6g022460
Brassica oleracea
Bo6g022460
I
0.734
Bo6g024770
Brassica oleracea
Bo6g024770
I
0.753
Bostr.26675s0076
Boechera stricta
Bostr.26675s0076
I
0.874
Bostr.26675s0109
Boechera stricta
Bostr.26675s0109
I
0.755
Bra018854
Brassica rapa
Bra018854
I
0.763
Bra018869
Brassica rapa
Bra018869
I
0.753
Bra030458
Brassica rapa
Bra030458
I
0.896
Cagra.2093s0004
Capsella grandiflora
Cagra.2093s0004
I
1.000
Carubv10011257m.g
Capsella rubella
Carubv10011257m.g
I
0.758
Cucsa.142990
Cucumis sativus
Cucsa.142990
I
0.720
fgenesh2_kg.1__4154__AT1G50680.1
Arabidopsis lyrata
fgenesh2_kg.1__4154__AT1G50680.1
I
0.794
fgenesh2_kg.1__4181__AT1G51120.1
Arabidopsis lyrata
fgenesh2_kg.1__4181__AT1G51120.1
I
0.823
TCM_040397
Theobroma cacao
TCM_040397
I
0.774
Thhalv10012152m.g
Eutrema salsugineum
Thhalv10012152m.g
I
0.765
Thhalv10012161m.g
Eutrema salsugineum
Thhalv10012161m.g
I
0.758
Thhalv10012356m.g
Eutrema salsugineum
Thhalv10012356m.g
I
0.765
Traes_2DL_896E50180
Triticum aestivum
Traes_2DL_896E50180
I
0.714