Carubv10011592m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10011592m.g T022857_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G51120
M01696_2.00 		Arabidopsis thaliana
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH8659 		0.832 0.832
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011592m B3 181 287

Links

Other B3 family TFs
Other Capsella rubella TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I 1.000
Bra030458 Brassica rapa Bra030458 I 0.896
Bo5g081270 Brassica oleracea Bo5g081270 I 0.875
Bostr.26675s0076 Boechera stricta Bostr.26675s0076 I 0.874
AT1G51120 Arabidopsis thaliana AT1G51120 D 0.823
fgenesh2_kg.1__4181__AT1G51120.1 Arabidopsis lyrata fgenesh2_kg.1__4181__AT1G51120.1 I 0.823
Bo6g022450 Brassica oleracea Bo6g022450 I 0.798
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I 0.794
Bo6g022280 Brassica oleracea Bo6g022280 I 0.779
TCM_040397 Theobroma cacao TCM_040397 I 0.774
AT1G50680 Arabidopsis thaliana AT1G50680 I 0.771
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I 0.765
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I 0.765
Bra018854 Brassica rapa Bra018854 I 0.763
Carubv10011257m.g Capsella rubella Carubv10011257m.g I 0.758
Thhalv10012161m.g Eutrema salsugineum Thhalv10012161m.g I 0.758
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I 0.755
Bo6g024770 Brassica oleracea Bo6g024770 I 0.753
Bra018869 Brassica rapa Bra018869 I 0.753
Bo6g022460 Brassica oleracea Bo6g022460 I 0.734
Cucsa.142990 Cucumis sativus Cucsa.142990 I 0.720
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.714