Carubv10011257m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10011257m.g T022855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G51120
M01696_2.00 		Arabidopsis thaliana
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH8659 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011257m B3 158 269

Links

Other B3 family TFs
Other Capsella rubella TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G50680 Arabidopsis thaliana AT1G50680 I 0.917
fgenesh2_kg.1__4154__AT1G50680.1 Arabidopsis lyrata fgenesh2_kg.1__4154__AT1G50680.1 I 0.907
Bostr.26675s0109 Boechera stricta Bostr.26675s0109 I 0.888
AT1G51120 Arabidopsis thaliana AT1G51120 D 0.885
Bostr.26675s0076 Boechera stricta Bostr.26675s0076 I 0.878
fgenesh2_kg.1__4181__AT1G51120.1 Arabidopsis lyrata fgenesh2_kg.1__4181__AT1G51120.1 I 0.875
Thhalv10012356m.g Eutrema salsugineum Thhalv10012356m.g I 0.806
Bo6g024770 Brassica oleracea Bo6g024770 I 0.794
Thhalv10012152m.g Eutrema salsugineum Thhalv10012152m.g I 0.786
Cagra.2093s0004 Capsella grandiflora Cagra.2093s0004 I 0.758
Carubv10011592m.g Capsella rubella Carubv10011592m.g I 0.758
Bo6g022450 Brassica oleracea Bo6g022450 I 0.755
TCM_040397 Theobroma cacao TCM_040397 I 0.742
Bra030458 Brassica rapa Bra030458 I 0.729
Bo5g081270 Brassica oleracea Bo5g081270 I 0.719
Bo6g022280 Brassica oleracea Bo6g022280 I 0.716
Traes_2DL_896E50180 Triticum aestivum Traes_2DL_896E50180 I 0.714