scaffold_200704.1 (Arabidopsis lyrata)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 scaffold_200704.1 T024731_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC5
M06717_2.00 		Arabidopsis thaliana
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCT		 Dap-seq
OMalley et al.(2016)
BPC5_col_a 		0.855 0.855
BPC5
M06718_2.00 		Arabidopsis thaliana
RRRRVNRRGAGARAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTYTCTCYYNBYYYY		 Dap-seq
OMalley et al.(2016)
BPC5_colamp_a 		0.855 0.855
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.709 0.709
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_200704.1 BBR 1 55

Links

Other BBR family TFs
Other Arabidopsis lyrata TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007143 Ricinus communis 30131.m007143 N 0.800
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.745
Aquca_007_00374 Aquilegia coerulea Aquca_007_00374 N 0.727
BPC5 Arabidopsis thaliana AT4G38910 D 0.855
BPC6 Arabidopsis thaliana AT5G42520 D 0.709
Bo1g002230 Brassica oleracea Bo1g002230 N 0.818
Bo6g076850 Brassica oleracea Bo6g076850 I 0.709
Bo7g119540 Brassica oleracea Bo7g119540 I 0.818
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.709
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N 0.800
Bra007518 Brassica rapa Bra007518 I 0.709
Bra010720 Brassica rapa Bra010720 N 0.818
Bra014504 Brassica rapa Bra014504 I 0.709
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N 0.800
Carubv10023579m.g Capsella rubella Carubv10023579m.g N 0.800
cassava24959.valid.m1 Manihot esculenta cassava24959.valid.m1 N 0.800
cassava38274.valid.m1 Manihot esculenta cassava38274.valid.m1 N 0.745
Ca_05693 Cicer arietinum Ca_05693 N 0.745
chr4.CM0175.470.nc Lotus japonicus chr4.CM0175.470.nc N 0.727
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.709
evm.TU.supercontig_150.9 Carica papaya evm.TU.supercontig_150.9 N 0.782
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.709
GLYMA05G38430 Glycine max GLYMA05G38430 N 0.745
GLYMA08G01240 Glycine max GLYMA08G01240 N 0.745
GSMUA_Achr4G24910_001 Musa acuminata GSMUA_Achr4G24910_001 N 0.709
Lus10018060.g Linum usitatissimum Lus10018060.g N 0.745
Lus10031078.g Linum usitatissimum Lus10031078.g N 0.764
Lus10042056.g Linum usitatissimum Lus10042056.g N 0.745
MTR_8g099780 Medicago truncatula MTR_8g099780 N 0.764
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.709
PRUPE_ppa008471mg Prunus persica PRUPE_ppa008471mg N 0.764
TCM_006767 Theobroma cacao TCM_006767 N 0.764
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.709
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I 0.836
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.709