MSC (Oryctolagus cuniculus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSOCUG00000007208 T036025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.914 1.000
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.914 1.000
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.914 1.000
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.914 1.000
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.914 1.000
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.914 1.000
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.914 1.000
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.914 1.000
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.914 1.000
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.914 1.000
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.914 0.981
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.914 0.981
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.914 0.981
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.914 0.981
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.914 0.981
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000006225 bHLH 102 154

Links

Other bHLH family TFs
Other Oryctolagus cuniculus TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28226.m000839 Ricinus communis 28226.m000839 I
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I
AMTR_s00024p00225650 Amborella trichopoda AMTR_s00024p00225650 N
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I
BGIOSGA004260 Oryza indica BGIOSGA004260 I
cassava25868.m1 Manihot esculenta cassava25868.m1 I
cassava2597.m1 Manihot esculenta cassava2597.m1 I
cassava2804.m1 Manihot esculenta cassava2804.m1 N
cassava31571.valid.m1 Manihot esculenta cassava31571.valid.m1 N
cassava33302.m1 Manihot esculenta cassava33302.m1 I
cassava3467.m1 Manihot esculenta cassava3467.m1 N
cassava41021.m1 Manihot esculenta cassava41021.m1 I
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I
cassava6348.valid.m1 Manihot esculenta cassava6348.valid.m1 I
cassava9274.m1 Manihot esculenta cassava9274.m1 I
cassava9944.m1 Manihot esculenta cassava9944.m1 I
Ca_12762 Cicer arietinum Ca_12762 N
Ciclev10009521m.g Citrus clementina Ciclev10009521m.g N
Ciclev10015648m.g Citrus clementina Ciclev10015648m.g I
Ciclev10022303m.g Citrus clementina Ciclev10022303m.g N
Ciclev10026498m.g Citrus clementina Ciclev10026498m.g I
Cla012784 Citrullus lanatus Cla012784 N
Cucsa.340790 Cucumis sativus Cucsa.340790 N
Eucgr.B01869 Eucalyptus grandis Eucgr.B01869 I
Eucgr.B03606 Eucalyptus grandis Eucgr.B03606 I
Eucgr.C00725 Eucalyptus grandis Eucgr.C00725 I
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N
Eucgr.E00407 Eucalyptus grandis Eucgr.E00407 N
Eucgr.E01031 Eucalyptus grandis Eucgr.E01031 I
Eucgr.F04422 Eucalyptus grandis Eucgr.F04422 N
Eucgr.F04423 Eucalyptus grandis Eucgr.F04423 N
evm.TU.supercontig_119.55 Carica papaya evm.TU.supercontig_119.55 I
evm.TU.supercontig_126.30 Carica papaya evm.TU.supercontig_126.30 N
evm.TU.supercontig_25.115 Carica papaya evm.TU.supercontig_25.115 N
evm.TU.supercontig_46.144 Carica papaya evm.TU.supercontig_46.144 N
F775_17212 Aegilops tauschii F775_17212 I
F775_19148 Aegilops tauschii F775_19148 I
F775_42516 Aegilops tauschii F775_42516 I
gene07418-v1.0-hybrid Fragaria vesca gene07418-v1.0-hybrid N
gene08880-v1.0-hybrid Fragaria vesca gene08880-v1.0-hybrid N
gene15383-v1.0-hybrid Fragaria vesca gene15383-v1.0-hybrid N
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I
GLYMA01G41610 Glycine max GLYMA01G41610 N
GLYMA05G04900 Glycine max GLYMA05G04900 I
GLYMA11G03770 Glycine max GLYMA11G03770 N
GLYMA13G09980 Glycine max GLYMA13G09980 I
GLYMA13G16890 Glycine max GLYMA13G16890 I
GLYMA14G24500 Glycine max GLYMA14G24500 I
GLYMA17G05831 Glycine max GLYMA17G05831 I
GLYMA17G15270 Glycine max GLYMA17G15270 I
Gorai.004G196800 Gossypium raimondii Gorai.004G196800 N
Gorai.007G260600 Gossypium raimondii Gorai.007G260600 I
Gorai.007G350500 Gossypium raimondii Gorai.007G350500 I
Gorai.009G040800 Gossypium raimondii Gorai.009G040800 N
Gorai.009G040900 Gossypium raimondii Gorai.009G040900 N
Gorai.009G146500 Gossypium raimondii Gorai.009G146500 N
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I
Gorai.010G096800 Gossypium raimondii Gorai.010G096800 N
Gorai.012G011700 Gossypium raimondii Gorai.012G011700 N
GRMZM2G395672 Zea mays GRMZM2G395672 I
GSMUA_Achr10G17610_001 Musa acuminata GSMUA_Achr10G17610_001 I
GSMUA_Achr11G23500_001 Musa acuminata GSMUA_Achr11G23500_001 N
GSMUA_Achr2G17960_001 Musa acuminata GSMUA_Achr2G17960_001 N
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I
GSMUA_Achr3G27700_001 Musa acuminata GSMUA_Achr3G27700_001 I
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I
GSMUA_Achr8G14540_001 Musa acuminata GSMUA_Achr8G14540_001 N
LjT20L14.140.nd Lotus japonicus LjT20L14.140.nd I
LPERR01G23630 Leersia perrieri LPERR01G23630 I
Lus10033438.g Linum usitatissimum Lus10033438.g I
MDP0000124555 Malus domestica MDP0000124555 N
MDP0000133817 Malus domestica MDP0000133817 I
MDP0000140609 Malus domestica MDP0000140609 I
MDP0000143276 Malus domestica MDP0000143276 I
MDP0000159011 Malus domestica MDP0000159011 I
MDP0000226215 Malus domestica MDP0000226215 N
MDP0000253904 Malus domestica MDP0000253904 N
MDP0000261265 Malus domestica MDP0000261265 I
MDP0000655330 Malus domestica MDP0000655330 I
MDP0000723614 Malus domestica MDP0000723614 I
MDP0000791870 Malus domestica MDP0000791870 I
MDP0000887107 Malus domestica MDP0000887107 I
MDP0000931057 Malus domestica MDP0000931057 N
mgf018735m Mimulus guttatus mgf018735m N
mgf024953m Mimulus guttatus mgf024953m N
MTR_4g100720 Medicago truncatula MTR_4g100720 N
OB06G16110 Oryza brachyantha OB06G16110 I
OLONG_002608 Oryza longistaminata OLONG_002608 I
orange1.1g028843m.g Citrus sinensis orange1.1g028843m.g N
orange1.1g028922m.g Citrus sinensis orange1.1g028922m.g N
orange1.1g036591m.g Citrus sinensis orange1.1g036591m.g I
orange1.1g040726m.g Citrus sinensis orange1.1g040726m.g I
ORGLA01G0227100 Oryza glaberrima ORGLA01G0227100 I
ORGLA06G0059500 Oryza glaberrima ORGLA06G0059500 I
ORUFI01G30610 Oryza rufipogon ORUFI01G30610 I
ORUFI06G06900 Oryza rufipogon ORUFI06G06900 I
OS01G0695900 Oryza sativa OS01G0695900 I
Pavir.Db02046 Panicum virgatum Pavir.Db02046 I
PDK_20s13009436g002 Phoenix dactylifera PDK_20s13009436g002 I
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I
PK05970.1 Cannabis sativa PK05970.1 I
PK08631.1 Cannabis sativa PK08631.1 N
PK11717.1 Cannabis sativa PK11717.1 I
Pm005572 Prunus mume Pm005572 I
Pm005573 Prunus mume Pm005573 I
Pm005577 Prunus mume Pm005577 I
Pm013277 Prunus mume Pm013277 N
Pm023419 Prunus mume Pm023419 N
Pm027048 Prunus mume Pm027048 I
Pm029489 Prunus mume Pm029489 I
POPTR_0001s04240 Populus trichocarpa POPTR_0001s04240 I
POPTR_0001s16970 Populus trichocarpa POPTR_0001s16970 N
POPTR_0003s06320 Populus trichocarpa POPTR_0003s06320 N
POPTR_0003s07680 Populus trichocarpa POPTR_0003s07680 N
POPTR_0003s21120 Populus trichocarpa POPTR_0003s21120 I
POPTR_0004s08650 Populus trichocarpa POPTR_0004s08650 I
POPTR_0006s23780 Populus trichocarpa POPTR_0006s23780 I
POPTR_0013s05300 Populus trichocarpa POPTR_0013s05300 I
POPTR_0013s05310 Populus trichocarpa POPTR_0013s05310 I
POPTR_0017s02990 Populus trichocarpa POPTR_0017s02990 I
POPTR_0018s08500 Populus trichocarpa POPTR_0018s08500 N
PRUPE_ppa006730mg Prunus persica PRUPE_ppa006730mg I
PRUPE_ppa015883mg Prunus persica PRUPE_ppa015883mg I
PRUPE_ppa016135mg Prunus persica PRUPE_ppa016135mg N
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I
PRUPE_ppa019380mg Prunus persica PRUPE_ppa019380mg I
PRUPE_ppa023768mg Prunus persica PRUPE_ppa023768mg I
PRUPE_ppa024533mg Prunus persica PRUPE_ppa024533mg N
PRUPE_ppa026916mg Prunus persica PRUPE_ppa026916mg I
Q2TCH0_PETHY Petunia x hybrida Q2TCH0_PETHY D
SapurV1A.0002s0910 Salix purpurea SapurV1A.0002s0910 N
SapurV1A.0081s0400 Salix purpurea SapurV1A.0081s0400 I
SapurV1A.0102s0340 Salix purpurea SapurV1A.0102s0340 I
SapurV1A.0120s0010 Salix purpurea SapurV1A.0120s0010 I
SapurV1A.0177s0330 Salix purpurea SapurV1A.0177s0330 N
SapurV1A.0177s0340 Salix purpurea SapurV1A.0177s0340 N
SapurV1A.0390s0200 Salix purpurea SapurV1A.0390s0200 I
SapurV1A.0435s0070 Salix purpurea SapurV1A.0435s0070 N
SapurV1A.0710s0030 Salix purpurea SapurV1A.0710s0030 I
SapurV1A.0918s0130 Salix purpurea SapurV1A.0918s0130 I
SapurV1A.1087s0090 Salix purpurea SapurV1A.1087s0090 N
SapurV1A.1276s0050 Salix purpurea SapurV1A.1276s0050 I
SapurV1A.1276s0060 Salix purpurea SapurV1A.1276s0060 I
SapurV1A.1360s0110 Salix purpurea SapurV1A.1360s0110 N
SapurV1A.1730s0020 Salix purpurea SapurV1A.1730s0020 I
SapurV1A.4052s0010 Salix purpurea SapurV1A.4052s0010 N
Si004316m.g Setaria italica Si004316m.g I
TCM_015933 Theobroma cacao TCM_015933 I
TCM_019261 Theobroma cacao TCM_019261 I
TCM_024180 Theobroma cacao TCM_024180 I
TCM_025910 Theobroma cacao TCM_025910 I
TCM_029126 Theobroma cacao TCM_029126 N
TCM_037379 Theobroma cacao TCM_037379 I
TCM_037383 Theobroma cacao TCM_037383 I
Traes_4DL_26A958CDD Triticum aestivum Traes_4DL_26A958CDD I
Traes_4DL_8A9D9ACCB Triticum aestivum Traes_4DL_8A9D9ACCB I
TRIUR3_09734 Triticum urartu TRIUR3_09734 I
VIT_00s0341g00050 Vitis vinifera VIT_00s0341g00050 N
VIT_04s0008g01840 Vitis vinifera VIT_04s0008g01840 I
VIT_04s0008g01870 Vitis vinifera VIT_04s0008g01870 I
VIT_09s0002g01380 Vitis vinifera VIT_09s0002g01380 N
VIT_11s0016g01300 Vitis vinifera VIT_11s0016g01300 I
VIT_13s0084g00530 Vitis vinifera VIT_13s0084g00530 I
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I