tcf3a (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000015322 T037779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.888 0.846
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.888 0.846
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.888 0.846
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.860 0.846
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.860 0.846
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.860 0.846
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.860 0.846
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.860 0.846
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.860 0.846
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.860 0.846
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.860 0.827
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.860 0.827
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.860 0.827
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.860 0.827
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.860 0.827
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.860 0.827
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.860 0.827
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.860 0.827
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.860 0.827
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.860 0.827
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.860 0.827
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.860 0.827
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.860 0.788
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.860 0.788
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.860 0.788
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.788
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.788
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.788
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.788
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.788
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.788
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.788
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018385 bHLH 531 584

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008818 Ricinus communis 30174.m008818 I
AC185108.3_FG011 Zea mays AC185108.3_FG011 I
ZAT10 Arabidopsis thaliana AT1G27730 D
ZAT6 Arabidopsis thaliana AT5G04340 D
AZF3 Arabidopsis thaliana AT5G43170 I
BGIOSGA010468 Oryza indica BGIOSGA010468 I
Bo3g142840 Brassica oleracea Bo3g142840 I
Bo5g052290 Brassica oleracea Bo5g052290 I
Bo7g048650 Brassica oleracea Bo7g048650 I
Bo7g065200 Brassica oleracea Bo7g065200 I
Bo9g181170 Brassica oleracea Bo9g181170 I
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I
Bra009464 Brassica rapa Bra009464 I
Bra010922 Brassica rapa Bra010922 I
Bra032845 Brassica rapa Bra032845 I
Bra033666 Brassica rapa Bra033666 I
BRADI1G16010 Brachypodium distachyon BRADI1G16010 I
BRADI4G03340 Brachypodium distachyon BRADI4G03340 I
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I
Carubv10001868m.g Capsella rubella Carubv10001868m.g I
Carubv10018774m.g Capsella rubella Carubv10018774m.g I
cassava14164.m1 Manihot esculenta cassava14164.m1 I
cassava19892.m1 Manihot esculenta cassava19892.m1 I
Ca_05641 Cicer arietinum Ca_05641 I
Cla022966 Citrullus lanatus Cla022966 I
Cucsa.395710 Cucumis sativus Cucsa.395710 I
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
Eucgr.K00165 Eucalyptus grandis Eucgr.K00165 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I
GLYMA10G40400 Glycine max GLYMA10G40400 I
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I
LPERR03G21480 Leersia perrieri LPERR03G21480 I
Lus10038929.g Linum usitatissimum Lus10038929.g N
mgf017082m Mimulus guttatus mgf017082m I
mgf021094m Mimulus guttatus mgf021094m I
MLOC_51405 Hordeum vulgare MLOC_51405 I
OB03G31780 Oryza brachyantha OB03G31780 I
OBART03G22570 Oryza barthii OBART03G22570 I
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437200 Oryza sativa OS03G0437200 I
OS12G0583700 Oryza sativa OS12G0583700 I
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I
Pavir.J15191 Panicum virgatum Pavir.J15191 I
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I
PGSC0003DMG400034322 Solanum tuberosum PGSC0003DMG400034322 I
C2H2 Arabidopsis lyrata scaffold_600374.1 I
AZF3 Arabidopsis lyrata scaffold_800768.1 I
Si032711m.g Setaria italica Si032711m.g I
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I