neurod6b (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000018633 T037803_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.869 0.885
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.869 0.885
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.869 0.885
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.869 0.885
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.869 0.885
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.869 0.885
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.869 0.885
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.869 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021808 bHLH 93 145

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000377 Ricinus communis 29613.m000377 I 0.000
29613.m000379 Ricinus communis 29613.m000379 I 0.000
AMTR_s00024p00159910 Amborella trichopoda AMTR_s00024p00159910 I 0.000
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.000
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.000
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.000
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.000
Bo3g035920 Brassica oleracea Bo3g035920 I 0.000
Bo4g014690 Brassica oleracea Bo4g014690 I 0.000
Bo4g191280 Brassica oleracea Bo4g191280 I 0.000
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.000
Bra000251 Brassica rapa Bra000251 I 0.000
Bra004667 Brassica rapa Bra004667 I 0.000
Bra016897 Brassica rapa Bra016897 I 0.000
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.000
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.000
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.000
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.000
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.000
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.000
Ca_07320 Cicer arietinum Ca_07320 I 0.000
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.000
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.000
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.000
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.000
F775_01928 Aegilops tauschii F775_01928 I 0.000
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.000
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.000
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.000
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.000
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.000
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.000
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.000
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.000
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.000
GRMZM2G134552 Zea mays GRMZM2G134552 N 0.000
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.000
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.000
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.000
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.000
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.000
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.000
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.000
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.000
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.000
MDP0000121493 Malus domestica MDP0000121493 I 0.000
MDP0000154434 Malus domestica MDP0000154434 I 0.000
mgf007626m Mimulus guttatus mgf007626m I 0.000
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.000
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.000
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.000
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.000
OB06G16230 Oryza brachyantha OB06G16230 I 0.000
OBART06G06800 Oryza barthii OBART06G06800 I 0.000
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.000
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.000
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.000
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.000
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.000
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.000
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.000
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.000
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.000
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.000
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.000
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.000
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.000
OS02G0773600 Oryza sativa OS02G0773600 I 0.000
OS06G0207600 Oryza sativa OS06G0207600 I 0.000
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.000
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.000
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.000
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.000
PK26699.1 Cannabis sativa PK26699.1 I 0.000
Pm025936 Prunus mume Pm025936 I 0.000
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.000
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.000
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.000
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.000
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.000
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.000
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.000
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.000
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.000
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.000
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.000
TCM_024932 Theobroma cacao TCM_024932 I 0.000
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.000
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.000
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.000