Afo_R006295 (Aptenodytes forsteri)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Afo_R006295 T046577_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.889 0.981
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.889 0.981
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.889 0.981
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.889 0.981
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.889 0.981
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.889 0.981
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.889 0.981
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.889 0.963
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.889 0.963
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.889 0.963
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.889 0.963
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.889 0.963
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.889 0.963
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.889 0.963
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.889 0.963
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.889 0.963
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.889 0.963
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.889 0.963
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.889 0.963
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.889 0.963
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.889 0.963
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.889 0.963
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Afo_R006295 bHLH 25 93

Links

Other bHLH family TFs
Other Aptenodytes forsteri TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30131.m007078 Ricinus communis 30131.m007078 I 0.000
AtbZIP7 Arabidopsis lyrata Al_scaffold_0007_270 N 0.000
AMTR_s00014p00097990 Amborella trichopoda AMTR_s00014p00097990 N 0.000
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I 0.000
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
AtbZIP6 Arabidopsis thaliana AT2G22850 N 0.000
AtbZIP7 Arabidopsis thaliana AT4G37730 N 0.000
Bo7g118720 Brassica oleracea Bo7g118720 N 0.000
Bostr.7867s1634 Boechera stricta Bostr.7867s1634 N 0.000
Bra017850 Brassica rapa Bra017850 N 0.000
Cagra.4290s0007 Capsella grandiflora Cagra.4290s0007 N 0.000
Cagra.9757s0009 Capsella grandiflora Cagra.9757s0009 N 0.000
Carubv10007844m.g Capsella rubella Carubv10007844m.g N 0.000
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I 0.000
cassava41140.m1 Manihot esculenta cassava41140.m1 I 0.000
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N 0.000
Ca_09362 Cicer arietinum Ca_09362 I 0.000
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I 0.000
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N 0.000
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I 0.000
Cla014262 Citrullus lanatus Cla014262 N 0.000
Cla022814 Citrullus lanatus Cla022814 N 0.000
Cucsa.043170 Cucumis sativus Cucsa.043170 N 0.000
Cucsa.248080 Cucumis sativus Cucsa.248080 N 0.000
Eucgr.F01867 Eucalyptus grandis Eucgr.F01867 N 0.000
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I 0.000
evm.TU.supercontig_129.74 Carica papaya evm.TU.supercontig_129.74 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
GLYMA01G40370 Glycine max GLYMA01G40370 I 0.000
GLYMA10G01640 Glycine max GLYMA10G01640 N 0.000
GLYMA11G04920 Glycine max GLYMA11G04920 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
GLYMA17G17100 Glycine max GLYMA17G17100 I 0.000
Gorai.002G126500 Gossypium raimondii Gorai.002G126500 I 0.000
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I 0.000
Gorai.008G085200 Gossypium raimondii Gorai.008G085200 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
Lus10001347.g Linum usitatissimum Lus10001347.g N 0.000
Lus10011722.g Linum usitatissimum Lus10011722.g I 0.000
Lus10019273.g Linum usitatissimum Lus10019273.g N 0.000
Lus10024279.g Linum usitatissimum Lus10024279.g N 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
MDP0000738631 Malus domestica MDP0000738631 I 0.000
mgf018581m Mimulus guttatus mgf018581m I 0.000
mgf018661m Mimulus guttatus mgf018661m N 0.000
mgf022473m Mimulus guttatus mgf022473m N 0.000
MTR_4g097440 Medicago truncatula MTR_4g097440 I 0.000
MTR_5g015090 Medicago truncatula MTR_5g015090 I 0.000
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I 0.000
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N 0.000
PGSC0003DMG400003701 Solanum tuberosum PGSC0003DMG400003701 I 0.000
PGSC0003DMG400021431 Solanum tuberosum PGSC0003DMG400021431 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PK06492.1 Cannabis sativa PK06492.1 N 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
Pm002353 Prunus mume Pm002353 I 0.000
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I 0.000
SapurV1A.0608s0130 Salix purpurea SapurV1A.0608s0130 N 0.000
AtbZIP6 Arabidopsis lyrata scaffold_400242.1 N 0.000
Solyc02g092090.1 Solanum lycopersicum Solyc02g092090.1 I 0.000
TCM_000835 Theobroma cacao TCM_000835 I 0.000
Thhalv10000309m.g Eutrema salsugineum Thhalv10000309m.g N 0.000
Thhalv10027117m.g Eutrema salsugineum Thhalv10027117m.g N 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
VIT_07s0005g01450 Vitis vinifera VIT_07s0005g01450 N 0.000