Carubv10004345m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10004345m.g T049339_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK03576.1
M01119_2.00 		Cannabis sativa
NCACGTGCN
NGCACGTGN		 PBM
Lambert et al.(2019)
pTH10095 		0.861 0.646
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004345m bHLH 444 492

Links

Other bHLH family TFs
Other Capsella rubella TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000736 Ricinus communis 29814.m000736 I
29970.m000987 Ricinus communis 29970.m000987 I
30170.m013698 Ricinus communis 30170.m013698 I
30170.m013927 Ricinus communis 30170.m013927 I
ACAC_0001026501 Angiostrongylus cantonensis ACAC_0001026501 I
ACOC_0001313301 Angiostrongylus costaricensis ACOC_0001313301 I
ACYPI000624 Acyrthosiphon pisum ACYPI000624 I
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I
ANCCEY_05272 Ancylostoma ceylanicum ANCCEY_05272 I
ANCDUO_04077 Ancylostoma duodenale ANCDUO_04077 I
ANCDUO_09307 Ancylostoma duodenale ANCDUO_09307 I
Aqu1.216620 Amphimedon queenslandica Aqu1.216620 I
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I
ASU_08391 Ascaris suum ASU_08391 I
AtMYB70 Arabidopsis thaliana AT2G23290 D
MYB25 Arabidopsis thaliana AT2G39880 I
F3A4.140 Arabidopsis thaliana AT3G50060 D
MYB109 Arabidopsis thaliana AT3G55730 I
MYB73 Arabidopsis thaliana AT4G37260 D
MYB44 Arabidopsis thaliana AT5G67300 D
BGLB007176 Biomphalaria glabrata BGLB007176 I
Bo1g004900 Brassica oleracea Bo1g004900 I
Bo2g167960 Brassica oleracea Bo2g167960 I
Bo3g153550 Brassica oleracea Bo3g153550 I
Bo4g025810 Brassica oleracea Bo4g025810 I
Bo4g151410 Brassica oleracea Bo4g151410 I
Bo7g063830 Brassica oleracea Bo7g063830 I
Bo8g079430 Brassica oleracea Bo8g079430 I
Bo8g090160 Brassica oleracea Bo8g090160 I
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I
Bra005006 Brassica rapa Bra005006 I
Bra007186 Brassica rapa Bra007186 I
Bra010593 Brassica rapa Bra010593 I
Bra011749 Brassica rapa Bra011749 I
Bra012149 Brassica rapa Bra012149 I
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I
CapteG137485 Capitella teleta CapteG137485 I
CapteG163104 Capitella teleta CapteG163104 I
CapteG88086 Capitella teleta CapteG88086 I
Carubv10007638m.g Capsella rubella Carubv10007638m.g I
Carubv10019440m.g Capsella rubella Carubv10019440m.g I
Carubv10023414m.g Capsella rubella Carubv10023414m.g I
Carubv10023692m.g Capsella rubella Carubv10023692m.g I
Carubv10027659m.g Capsella rubella Carubv10027659m.g I
cassava16103.m1 Manihot esculenta cassava16103.m1 I
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I
cassava46434.m1 Manihot esculenta cassava46434.m1 I
cassava47374.m1 Manihot esculenta cassava47374.m1 I
Ca_01522 Cicer arietinum Ca_01522 I
Ca_02182 Cicer arietinum Ca_02182 I
Ca_12468 Cicer arietinum Ca_12468 I
CGI_10024574 Crassostrea gigas CGI_10024574 I
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I
Cla004431 Citrullus lanatus Cla004431 I
Cla006872 Citrullus lanatus Cla006872 I
Cla014191 Citrullus lanatus Cla014191 I
Cla020946 Citrullus lanatus Cla020946 I
Cla022947 Citrullus lanatus Cla022947 I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
Cucsa.073130 Cucumis sativus Cucsa.073130 I
Cucsa.102710 Cucumis sativus Cucsa.102710 I
Cucsa.352560 Cucumis sativus Cucsa.352560 I
Cucsa.368410 Cucumis sativus Cucsa.368410 I
Cucsa.395890 Cucumis sativus Cucsa.395890 I
D915_05082 Fasciola hepatica D915_05082 I
DAPPUDRAFT_27999 Daphnia pulex DAPPUDRAFT_27999 I
DAPPUDRAFT_310992 Daphnia pulex DAPPUDRAFT_310992 I
DICVIV_04886 Dictyocaulus viviparus DICVIV_04886 I
ECPE_0000408701 Echinostoma caproni ECPE_0000408701 I
ENSAMEG00000012407 Ailuropoda melanoleuca ENSAMEG00000012407 I
ENSAMXG00000007099 Astyanax mexicanus ENSAMXG00000007099 I
ENSAMXG00000010015 Astyanax mexicanus ENSAMXG00000010015 I
ENSAMXG00000012419 Astyanax mexicanus ENSAMXG00000012419 I
KLF1 Bos taurus ENSBTAG00000006083 I
ENSBTAP00000043340-D1 Bos grunniens ENSBTAP00000043340-D1 I
KLF1 Canis familiaris ENSCAFG00000017111 I
zf(c2h2)-24 Ciona intestinalis ENSCING00000012142 I
KLF1 Callithrix jacchus ENSCJAG00000004762 I
KLF8 Callithrix jacchus ENSCJAG00000007304 I
KLF1 Cavia porcellus ENSCPOG00000000784 I
KLF8 Cavia porcellus ENSCPOG00000010165 I
ENSCSAG00000006545 Chlorocebus sabaeus ENSCSAG00000006545 I
ENSCSAG00000012078 Chlorocebus sabaeus ENSCSAG00000012078 I
ENSCSAVG00000006620 Ciona savignyi ENSCSAVG00000006620 I
klf1 Danio rerio ENSDARG00000017400 I
klf5l Danio rerio ENSDARG00000018757 I
klf8 Danio rerio ENSDARG00000060661 I
KLF8 Equus caballus ENSECAG00000016062 I
KLF1 Felis catus ENSFCAG00000026066 I
KLF8 Homo sapiens ENSG00000102349 D
KLF1 Homo sapiens ENSG00000105610 D
klf1 Gasterosteus aculeatus ENSGACG00000019143 I
klf5l Gasterosteus aculeatus ENSGACG00000020841 I
KLF1 Gorilla gorilla ENSGGOG00000003408 I
KLF8 Gorilla gorilla ENSGGOG00000008188 I
ENSGMOG00000014819 Gadus morhua ENSGMOG00000014819 I
ENSLACG00000016686 Latimeria chalumnae ENSLACG00000016686 I
KLF1 Loxodonta africana ENSLAFG00000016145 I
ENSLOCG00000014951 Lepisosteus oculatus ENSLOCG00000014951 I
KLF1 Microcebus murinus ENSMICG00000016260 I
KLF1 Myotis lucifugus ENSMLUG00000012751 I
KLF8 Myotis lucifugus ENSMLUG00000016695 I
KLF1 Macaca mulatta ENSMMUG00000011230 I
ENSMMUP00000014716 Macaca fascicularis ENSMMUP00000014716 I
ENSMMUP00000019255 Macaca fascicularis ENSMMUP00000019255 I
ENSMPUG00000004544 Mustela putorius furo ENSMPUG00000004544 I
Klf8 Mus musculus ENSMUSG00000041649 D
Klf1 Mus musculus ENSMUSG00000054191 D
ENSNLEG00000012868 Nomascus leucogenys ENSNLEG00000012868 I
ENSNLEG00000016353 Nomascus leucogenys ENSNLEG00000016353 I
ENSOARG00000005543 Ovis aries ENSOARG00000005543 I
ENSOARG00000012925 Ovis aries ENSOARG00000012925 I
KLF8 Oryctolagus cuniculus ENSOCUG00000005068 I
KLF1 Oryctolagus cuniculus ENSOCUG00000011998 I
KLF1 Otolemur garnettii ENSOGAG00000025438 I
ENSONIG00000013256 Oreochromis niloticus ENSONIG00000013256 I
KLF1 Ochotona princeps ENSOPRG00000004951 I
klf1 Oryzias latipes ENSORLG00000013713 I
klf5l Oryzias latipes ENSORLG00000015385 I
ENSP00000417303-D1 Bos grunniens ENSP00000417303-D1 I
KLF1 Procavia capensis ENSPCAG00000015589 I
ENSPFOG00000000768 Poecilia formosa ENSPFOG00000000768 I
ENSPFOG00000012141 Poecilia formosa ENSPFOG00000012141 I
ENSPPYG00000009612 Pongo abelii ENSPPYG00000009612 I
ENSPPYG00000020400 Pongo abelii ENSPPYG00000020400 I
KLF1 Pan troglodytes ENSPTRG00000010547 I
KLF8 Pan troglodytes ENSPTRG00000021957 I
KLF8 Pteropus vampyrus ENSPVAG00000000264 I
Klf1 Rattus norvegicus ENSRNOG00000003443 I
Klf8 Rattus norvegicus ENSRNOG00000039057 I
KLF1 Sus scrofa ENSSSCG00000013730 I
ENSSTOG00000012012 Ictidomys tridecemlineatus ENSSTOG00000012012 I
ENSSTOG00000021956 Ictidomys tridecemlineatus ENSSTOG00000021956 I
KLF1 Tupaia belangeri ENSTBEG00000013433 I
klf5l Tetraodon nigroviridis ENSTNIG00000004691 I
klf1 Tetraodon nigroviridis ENSTNIG00000006251 I
ENSTRUG00000007828 Takifugu rubripes ENSTRUG00000007828 I
klf1 Takifugu rubripes ENSTRUG00000009569 I
klf5l Takifugu rubripes ENSTRUG00000009618 I
ENSTSYG00000011477 Tarsius syrichta ENSTSYG00000011477 I
KLF8 Tursiops truncatus ENSTTRG00000008773 I
ENSXMAG00000005126 Xiphophorus maculatus ENSXMAG00000005126 I
ENSXMAG00000015343 Xiphophorus maculatus ENSXMAG00000015343 I
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I
EVEC_0001049001 Enterobius vermicularis EVEC_0001049001 I
evm.TU.supercontig_19.155 Carica papaya evm.TU.supercontig_19.155 I
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I
GF24217 Drosophila ananassae FBgn0101211 I
GG15151 Drosophila erecta FBgn0107404 I
GH16421 Drosophila grimshawi FBgn0123892 I
GI12500 Drosophila mojavensis FBgn0135257 I
GM14583 Drosophila sechellia FBgn0169504 I
GJ12406 Drosophila virilis FBgn0199649 I
GK20520 Drosophila willistoni FBgn0222517 I
GE21373 Drosophila yakuba FBgn0238635 I
dar1 Drosophila melanogaster FBgn0263239 D
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I
fgenesh2_pg.scaffold_114000041 Branchiostoma floridae fgenesh2_pg.scaffold_114000041 I
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I
GLYMA01G39740 Glycine max GLYMA01G39740 I
GLYMA04G03910 Glycine max GLYMA04G03910 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
GLYMA06G04010 Glycine max GLYMA06G04010 I
GLYMA11G05550 Glycine max GLYMA11G05550 I
GLYMA17G35620 Glycine max GLYMA17G35620 I
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I
HCOI00075700 Haemonchus contortus HCOI00075700 I
HCOI00079800 Haemonchus contortus HCOI00079800 I
HelroG126271 Helobdella robusta HelroG126271 I
HPBE_0001838801 Heligmosomoides bakeri HPBE_0001838801 I
HPLM_0000358501 Haemonchus placei HPLM_0000358501 I
HPLM_0000852701 Haemonchus placei HPLM_0000852701 I
ISCW016130 Ixodes scapularis ISCW016130 I
ISCW016565 Ixodes scapularis ISCW016565 I
KGM_10879 Danaus plexippus KGM_10879 I
LCUP013827 Lucilia cuprina LCUP013827 I
LDEC001973 Leptinotarsa decemlineata LDEC001973 I
LLOJ006638 Lutzomyia longipalpis LLOJ006638 I
LotgiG79321 Lottia gigantea LotgiG79321 I
LPERR01G32110 Leersia perrieri LPERR01G32110 I
Lus10007503.g Linum usitatissimum Lus10007503.g I
Lus10010260.g Linum usitatissimum Lus10010260.g I
Lus10021762.g Linum usitatissimum Lus10021762.g I
Lus10028979.g Linum usitatissimum Lus10028979.g I
Lus10030336.g Linum usitatissimum Lus10030336.g I
Lus10032764.g Linum usitatissimum Lus10032764.g I
Lus10040940.g Linum usitatissimum Lus10040940.g I
MDOA012204 Musca domestica MDOA012204 I
MDP0000196986 Malus domestica MDP0000196986 I
MDP0000232454 Malus domestica MDP0000232454 I
MDP0000275800 Malus domestica MDP0000275800 I
MDP0000298689 Malus domestica MDP0000298689 I
MDP0000463846 Malus domestica MDP0000463846 I
MDP0000477900 Malus domestica MDP0000477900 I
MDP0000480596 Malus domestica MDP0000480596 I
MDP0000641708 Malus domestica MDP0000641708 I
MDP0000784297 Malus domestica MDP0000784297 I
MDP0000823270 Malus domestica MDP0000823270 I
MDP0000894463 Malus domestica MDP0000894463 I
mgf014089m Mimulus guttatus mgf014089m I
mgf020432m Mimulus guttatus mgf020432m I
mgf023922m Mimulus guttatus mgf023922m I
ML25776a Mnemiopsis leidyi ML25776a I
MTR_4g094982 Medicago truncatula MTR_4g094982 I
MTR_5g016510 Medicago truncatula MTR_5g016510 I
MTR_5g082910 Medicago truncatula MTR_5g082910 I
Myotis_brandtii_KLF8_10010984 Myotis brandtii Myotis_brandtii_KLF8_10010984 I
NBR_0001426101 Nippostrongylus brasiliensis NBR_0001426101 I
NECAME_03970 Necator americanus NECAME_03970 I
NEMVEDRAFT_v1g229565 Nematostella vectensis NEMVEDRAFT_v1g229565 I
nRc.2.0.1.g22861 Romanomermis culicivorax nRc.2.0.1.g22861 I
OB01G46120 Oryza brachyantha OB01G46120 I
Ocbimv22019777m.g Octopus bimaculoides Ocbimv22019777m.g I
Ocbimv22021283m.g Octopus bimaculoides Ocbimv22021283m.g I
Ocbimv22021426m.g Octopus bimaculoides Ocbimv22021426m.g I
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I
PHUM206780 Pediculus humanus PHUM206780 I
PHUM207190 Pediculus humanus PHUM207190 I
PK01153.1 Cannabis sativa PK01153.1 I
PK17282.1 Cannabis sativa PK17282.1 I
PK28565.1 Cannabis sativa PK28565.1 D
Pm005220 Prunus mume Pm005220 I
Pm005332 Prunus mume Pm005332 I
Pm018951 Prunus mume Pm018951 I
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I
PXEA_0003773801 Protopolystoma xenopodis PXEA_0003773801 I
Sakowv30017238m.g Saccoglossus kowalevskii Sakowv30017238m.g I
Sakowv30017457m.g Saccoglossus kowalevskii Sakowv30017457m.g I
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I
scaffold1313-EXSNAP2012.6 Pristionchus exspectatus scaffold1313-EXSNAP2012.6 I
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I
SMAR000131 Strigamia maritima SMAR000131 I
SMAR007231 Strigamia maritima SMAR007231 I
SMAR008306 Strigamia maritima SMAR008306 I
SMU15026765 Schmidtea mediterranea SMU15026765 I
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I
SPU_017470 Strongylocentrotus purpuratus SPU_017470 I
SPU_020311 Strongylocentrotus purpuratus SPU_020311 I
TCM_000696 Theobroma cacao TCM_000696 I
TCM_007138 Theobroma cacao TCM_007138 I
TCM_042474 Theobroma cacao TCM_042474 I
tetur02g04760 Tetranychus urticae tetur02g04760 I
tetur11g05790 Tetranychus urticae tetur11g05790 I
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I
klf6.L Xenopus laevis XB-GENE-6254475 I
klf6 Xenopus tropicalis XB-GENE-986303 I
klf6.S Xenopus laevis XB-GENE-986307 I
YQE_08410 Dendroctonus ponderosae YQE_08410 I