Pavir.J01638 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J01638 T050855_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.861 0.633
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01638.1.p bHLH 97 145

Links

Other bHLH family TFs
Other Panicum virgatum TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAC59859 Xenopus laevis AAC59859 N
AAH73449 Xenopus laevis AAH73449 N
csin112095 Clonorchis sinensis csin112095 N
ECANG7_07075 Echinococcus canadensis ECANG7_07075 N
EmuJ_000941400 Echinococcus multilocularis EmuJ_000941400 N
hmgb3b Danio rerio ENSDARG00000006408 N
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N
ENSMEUG00000011289 Macropus eugenii ENSMEUG00000011289 N
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N
ENSOGAG00000027410 Otolemur garnettii ENSOGAG00000027410 N
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N
AC127605.1 Rattus norvegicus ENSRNOG00000033156 N
LOC108349258 Rattus norvegicus ENSRNOG00000047496 N
LOC103694516 Rattus norvegicus ENSRNOG00000049646 N
LOC103694517 Rattus norvegicus ENSRNOG00000052269 N
AABR07041586.2 Rattus norvegicus ENSRNOG00000052769 N
RGD1561558 Rattus norvegicus ENSRNOG00000053609 N
RGD1566225 Rattus norvegicus ENSRNOG00000055742 N
AABR07045786.1 Rattus norvegicus ENSRNOG00000055923 N
LOC681067 Rattus norvegicus ENSRNOG00000057013 N
AABR07040480.1 Rattus norvegicus ENSRNOG00000057407 N
LOC691030 Rattus norvegicus ENSRNOG00000057926 N
RGD1560585 Rattus norvegicus ENSRNOG00000060534 N
ENSTBEG00000005874 Tupaia belangeri ENSTBEG00000005874 N
ENSTBEG00000015340 Tupaia belangeri ENSTBEG00000015340 N
HmN_000761000 Hymenolepis microstoma HmN_000761000 N
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N
Myotis_brandtii_Hmgb1_10003213 Myotis brandtii Myotis_brandtii_Hmgb1_10003213 N
Myotis_brandtii_Hmgb1_10026956 Myotis brandtii Myotis_brandtii_Hmgb1_10026956 N
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N
T265_10726 Opisthorchis viverrini T265_10726 N
TASK_0000795701 Taenia asiatica TASK_0000795701 N
TRE_0000690301 Trichobilharzia regenti TRE_0000690301 N
TsM_000746700 Taenia solium TsM_000746700 N