lyl1 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-940268 T051917_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LYL1
M08714_2.00 		Homo sapiens
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_HUMAN.H11MO.0.A 		0.912 0.904
TAL1
M08734_2.00 		Homo sapiens
BSTTATCWSNNNNNNVCVV
BBGBNNNNNNSWGATAASV		 Misc
Kulakovskiy et al.(2013)
TAL1_HUMAN.H11MO.0.A 		0.890 0.923
Tal1
M08759_2.00 		Mus musculus
BYKBNNNNNNVWGATAAVVN
NBBTTATCWBNNNNNNVMRV		 Misc
Kulakovskiy et al.(2013)
TAL1_MOUSE.H11MO.0.A 		0.890 0.923
Tal1
M09471_2.00 		Mus musculus
NVCWKMWG
CWKMWGBN		 Misc
Heinz et al.(2010)
HPC7-Scl_GSE13511 		0.890 0.923
Tal1
M09472_2.00 		Mus musculus
YTATCWSNNNNNNVCAGVHN
NDBCTGBNNNNNNSWGATAR		 Misc
Heinz et al.(2010)
Ter119-SCL_GSE18720 		0.890 0.923
TAL1
M09870_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_01 		0.890 0.923
TAL1
M09871_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6_01 		0.890 0.923
TAL1
M09872_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6 		0.890 0.923
Lyl1
M08763_2.00 		Mus musculus
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_MOUSE.H11MO.0.A 		0.877 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939165 bHLH 186 238

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28211.m000132 Ricinus communis 28211.m000132 I
29269.m000250 Ricinus communis 29269.m000250 I
29889.m003388 Ricinus communis 29889.m003388 I
30076.m004574 Ricinus communis 30076.m004574 I
30174.m008805 Ricinus communis 30174.m008805 I
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I
SPL1 Arabidopsis thaliana AT2G47070 D
SPL12 Arabidopsis thaliana AT3G60030 D
BGIOSGA016888 Oryza indica BGIOSGA016888 I
BGIOSGA024253 Oryza indica BGIOSGA024253 I
BGIOSGA029541 Oryza indica BGIOSGA029541 I
Bo4g005730 Brassica oleracea Bo4g005730 I
Bo4g015800 Brassica oleracea Bo4g015800 I
Bo4g191350 Brassica oleracea Bo4g191350 I
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I
Bra004674 Brassica rapa Bra004674 I
Bra016891 Brassica rapa Bra016891 I
Bra041037 Brassica rapa Bra041037 I
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I
BRADI3G40030 Brachypodium distachyon BRADI3G40030 I
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I
Carubv10016658m.g Capsella rubella Carubv10016658m.g I
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I
Ca_03548 Cicer arietinum Ca_03548 I
Ca_07299 Cicer arietinum Ca_07299 I
Ca_10879 Cicer arietinum Ca_10879 I
Ca_16243 Cicer arietinum Ca_16243 I
Ca_24655 Cicer arietinum Ca_24655 I
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I
Cla021411 Citrullus lanatus Cla021411 I
Cucsa.242790 Cucumis sativus Cucsa.242790 I
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
F775_10743 Aegilops tauschii F775_10743 I
F775_31139 Aegilops tauschii F775_31139 I
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I
GLYMA01G15134 Glycine max GLYMA01G15134 I
GLYMA02G01160 Glycine max GLYMA02G01160 I
GLYMA02G30670 Glycine max GLYMA02G30670 I
GLYMA03G29901 Glycine max GLYMA03G29901 I
GLYMA06G36140 Glycine max GLYMA06G36140 I
GLYMA09G09790 Glycine max GLYMA09G09790 I
GLYMA10G01211 Glycine max GLYMA10G01211 I
GLYMA11G16556 Glycine max GLYMA11G16556 I
GLYMA12G27330 Glycine max GLYMA12G27330 I
GLYMA15G21860 Glycine max GLYMA15G21860 I
GLYMA18G36960 Glycine max GLYMA18G36960 I
GLYMA19G32800 Glycine max GLYMA19G32800 I
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I
Gorai.006G066700 Gossypium raimondii Gorai.006G066700 I
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I
Gorai.007G362000 Gossypium raimondii Gorai.007G362000 I
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I
GRMZM2G126018 Zea mays GRMZM2G126018 I
GRMZM2G156756 Zea mays GRMZM2G156756 I
GRMZM2G160917 Zea mays GRMZM2G160917 I
GRMZM2G307588 Zea mays GRMZM2G307588 I
GRMZM2G460544 Zea mays GRMZM2G460544 N
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I
GSMUA_Achr3G11170_001 Musa acuminata GSMUA_Achr3G11170_001 I
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I
GSMUA_Achr4G03880_001 Musa acuminata GSMUA_Achr4G03880_001 I
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I
GSMUA_Achr6G22280_001 Musa acuminata GSMUA_Achr6G22280_001 I
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I
GSMUA_Achr7G20510_001 Musa acuminata GSMUA_Achr7G20510_001 I
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I
GSMUA_Achr9G22260_001 Musa acuminata GSMUA_Achr9G22260_001 I
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I
LPERR03G34030 Leersia perrieri LPERR03G34030 I
LPERR04G17030 Leersia perrieri LPERR04G17030 I
LPERR08G16940 Leersia perrieri LPERR08G16940 I
LPERR09G10900 Leersia perrieri LPERR09G10900 I
Lus10004523.g Linum usitatissimum Lus10004523.g I
Lus10010071.g Linum usitatissimum Lus10010071.g I
Lus10012020.g Linum usitatissimum Lus10012020.g I
Lus10016275.g Linum usitatissimum Lus10016275.g I
Lus10021034.g Linum usitatissimum Lus10021034.g I
Lus10023818.g Linum usitatissimum Lus10023818.g I
MDP0000156994 Malus domestica MDP0000156994 I
MDP0000180408 Malus domestica MDP0000180408 I
MDP0000180409 Malus domestica MDP0000180409 I
MDP0000262141 Malus domestica MDP0000262141 I
MDP0000297978 Malus domestica MDP0000297978 I
MDP0000589558 Malus domestica MDP0000589558 I
MDP0000861601 Malus domestica MDP0000861601 I
MDP0000919693 Malus domestica MDP0000919693 I
MDP0000919694 Malus domestica MDP0000919694 I
mgf001202m Mimulus guttatus mgf001202m I
mgf001295m Mimulus guttatus mgf001295m I
mgf009459m Mimulus guttatus mgf009459m I
mgf012995m Mimulus guttatus mgf012995m I
mgf025134m Mimulus guttatus mgf025134m I
MLOC_4830 Hordeum vulgare MLOC_4830 I
MTR_1g053715 Medicago truncatula MTR_1g053715 I
MTR_1g086250 Medicago truncatula MTR_1g086250 I
MTR_7g092930 Medicago truncatula MTR_7g092930 I
MTR_7g444860 Medicago truncatula MTR_7g444860 I
MTR_8g463140 Medicago truncatula MTR_8g463140 I
OB03G47050 Oryza brachyantha OB03G47050 I
OB04G27960 Oryza brachyantha OB04G27960 I
OB08G26920 Oryza brachyantha OB08G26920 I
OB08G27190 Oryza brachyantha OB08G27190 I
OB09G21350 Oryza brachyantha OB09G21350 N
OBART03G39900 Oryza barthii OBART03G39900 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART07G15570 Oryza barthii OBART07G15570 I
OBART08G20010 Oryza barthii OBART08G20010 N
OBART09G14800 Oryza barthii OBART09G14800 I
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I
OGLUM08G21260 Oryza glumaepatula OGLUM08G21260 I
OGLUM09G15430 Oryza glumaepatula OGLUM09G15430 I
OLONG_015903 Oryza longistaminata OLONG_015903 N
OLONG_020138 Oryza longistaminata OLONG_020138 N
OMERI03G36740 Oryza meridionalis OMERI03G36740 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
OMERI07G12270 Oryza meridionalis OMERI07G12270 I
OMERI09G11520 Oryza meridionalis OMERI09G11520 I
ONIVA03G41820 Oryza nivara ONIVA03G41820 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA07G14170 Oryza nivara ONIVA07G14170 I
ONIVA08G22610 Oryza nivara ONIVA08G22610 I
ONIVA09G15400 Oryza nivara ONIVA09G15400 I
OPUNC03G37130 Oryza punctata OPUNC03G37130 I
OPUNC03G37170 Oryza punctata OPUNC03G37170 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC08G18140 Oryza punctata OPUNC08G18140 I
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORGLA08G0176500 Oryza glaberrima ORGLA08G0176500 I
ORGLA09G0114000 Oryza glaberrima ORGLA09G0114000 I
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I
ORUFI08G22440 Oryza rufipogon ORUFI08G22440 I
ORUFI09G15960 Oryza rufipogon ORUFI09G15960 I
SPL6 Oryza sativa OS03G0833300 I
SPL7 Oryza sativa OS04G0551500 I
SPL14 Oryza sativa OS08G0509600 I
OS09G0491532 Oryza sativa OS09G0491532 I
Pavir.Ba01711 Panicum virgatum Pavir.Ba01711 I
Pavir.Fb01946 Panicum virgatum Pavir.Fb01946 I
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I
Pavir.J01500 Panicum virgatum Pavir.J01500 I
Pavir.J11258 Panicum virgatum Pavir.J11258 I
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I
PGSC0003DMG400011433 Solanum tuberosum PGSC0003DMG400011433 I
PK06791.1 Cannabis sativa PK06791.1 D
PK11310.1 Cannabis sativa PK11310.1 I
PK18312.1 Cannabis sativa PK18312.1 I
Pm002693 Prunus mume Pm002693 I
Pm007035 Prunus mume Pm007035 I
Pm008474 Prunus mume Pm008474 I
Pm008475 Prunus mume Pm008475 I
Pm017778 Prunus mume Pm017778 I
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I
SapurV1A.0018s0470 Salix purpurea SapurV1A.0018s0470 I
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I
Sb01g002530 Sorghum bicolor Sb01g002530 I
Sb02g028420 Sorghum bicolor Sb02g028420 I
Sb07g027740 Sorghum bicolor Sb07g027740 I
SPL12 Arabidopsis lyrata scaffold_503227.1 I
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I
Si013870m.g Setaria italica Si013870m.g I
Si030195m.g Setaria italica Si030195m.g I
Si034095m.g Setaria italica Si034095m.g I
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I
Solyc10g078700.1 Solanum lycopersicum Solyc10g078700.1 I
TCM_004922 Theobroma cacao TCM_004922 I
TCM_005620 Theobroma cacao TCM_005620 I
TCM_021482 Theobroma cacao TCM_021482 I
TCM_024873 Theobroma cacao TCM_024873 I
TCM_031595 Theobroma cacao TCM_031595 I
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I
Traes_7DS_E2A582546 Triticum aestivum Traes_7DS_E2A582546 N
TRIUR3_23872 Triticum urartu TRIUR3_23872 I
TRIUR3_33729 Triticum urartu TRIUR3_33729 I
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I