Pavir.J01411 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.J01411 T072437_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.859 0.797
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.858 0.766
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.848 0.734
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.844 0.703
GBF3
M01779_2.00 		Arabidopsis thaliana
NBMCASSTVD
HBASSTGKVN		 PBM
Weirauch et al.(2014)
pTH7328 		0.829 0.719
GBF3
M06770_2.00 		Arabidopsis thaliana
DNHDNHSACGTGKMD
HKMCACGTSDNHDNH		 Dap-seq
OMalley et al.(2016)
GBF3_colamp 		0.829 0.719
GBF3
M06771_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
GBF3_col 		0.829 0.719
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.815 0.750
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.815 0.750
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.808 0.656
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.808 0.656
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.808 0.656
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.808 0.656
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.808 0.656
CPRF1_PETCR
M10066_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_01 		0.787 0.688
CPRF1_PETCR
M10067_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_Q2 		0.787 0.688
CPRF1_PETCR
M10068_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF_Q2 		0.787 0.688
BZIP68
M01770_2.00 		Arabidopsis thaliana
BMCASGBND
HNVCSTGKV		 PBM
Weirauch et al.(2014)
pTH8192 		0.786 0.625
BZIP68
M06752_2.00 		Arabidopsis thaliana
DNWKNHSACGTGGCR
YGCCACGTSDNMWNH		 Dap-seq
OMalley et al.(2016)
bZIP68_col_a 		0.786 0.625
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J01411.1.p bZIP 238 301
Pavir.J01411.2.p bZIP 221 284

Links

Other bZIP family TFs
Other Panicum virgatum TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001068 Ricinus communis 29646.m001068 I 0.802
30174.m008698 Ricinus communis 30174.m008698 I 0.847
GBF2 Arabidopsis lyrata Al_scaffold_0006_3899 I 0.833
Aquca_013_00209 Aquilegia coerulea Aquca_013_00209 I 0.820
Aquca_037_00034 Aquilegia coerulea Aquca_037_00034 I 0.803
BZIP68 Arabidopsis thaliana AT1G32150 D 0.786
GBF3 Arabidopsis thaliana AT2G46270 D 0.829
GBF2 Arabidopsis thaliana AT4G01120 D 0.844
GBF1 Arabidopsis thaliana AT4G36730 D 0.808
BGIOSGA001085 Oryza indica BGIOSGA001085 I 0.859
BGIOSGA020389 Oryza indica BGIOSGA020389 I 0.842
Bo1g005460 Brassica oleracea Bo1g005460 I 0.812
Bo3g039150 Brassica oleracea Bo3g039150 I 0.801
Bo4g010410 Brassica oleracea Bo4g010410 I 0.829
Bo4g038560 Brassica oleracea Bo4g038560 I 0.791
Bo9g003700 Brassica oleracea Bo9g003700 I 0.833
Bostr.7365s0064 Boechera stricta Bostr.7365s0064 I 0.830
Bostr.7867s1529 Boechera stricta Bostr.7867s1529 I 0.808
Bra004550 Brassica rapa Bra004550 I 0.829
Bra010572 Brassica rapa Bra010572 I 0.821
Bra011701 Brassica rapa Bra011701 I 0.812
Bra037382 Brassica rapa Bra037382 I 0.833
BRADI2G15940 Brachypodium distachyon BRADI2G15940 I 0.853
BRADI2G45567 Brachypodium distachyon BRADI2G45567 I 0.858
Cagra.0050s0071 Capsella grandiflora Cagra.0050s0071 I 0.829
Cagra.1372s0011 Capsella grandiflora Cagra.1372s0011 I 0.830
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I 0.786
Cagra.5996s0003 Capsella grandiflora Cagra.5996s0003 I 0.808
Carubv10001247m.g Capsella rubella Carubv10001247m.g I 0.830
Carubv10005287m.g Capsella rubella Carubv10005287m.g I 0.808
Carubv10023434m.g Capsella rubella Carubv10023434m.g I 0.829
cassava29861.valid.m1 Manihot esculenta cassava29861.valid.m1 I 0.841
cassava29862.valid.m1 Manihot esculenta cassava29862.valid.m1 I 0.841
cassava43569.valid.m1 Manihot esculenta cassava43569.valid.m1 I 0.833
cassava43570.valid.m1 Manihot esculenta cassava43570.valid.m1 I 0.833
cassava43571.valid.m1 Manihot esculenta cassava43571.valid.m1 I 0.833
cassava45491.m1 Manihot esculenta cassava45491.m1 I 0.802
cassava46468.m1 Manihot esculenta cassava46468.m1 I 0.833
Ca_01293 Cicer arietinum Ca_01293 I 0.823
Ca_11455 Cicer arietinum Ca_11455 I 0.783
Ca_15839 Cicer arietinum Ca_15839 I 0.786
Ca_17787 Cicer arietinum Ca_17787 I 0.806
chr1.CM0579.280.nd Lotus japonicus chr1.CM0579.280.nd I 0.798
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I 0.783
Ciclev10020314m.g Citrus clementina Ciclev10020314m.g I 0.821
Ciclev10025963m.g Citrus clementina Ciclev10025963m.g I 0.782
Cla008988 Citrullus lanatus Cla008988 I 0.783
Cla016502 Citrullus lanatus Cla016502 I 0.782
Cla021500 Citrullus lanatus Cla021500 I 0.824
CPRF1_PETCR Petroselinum crispum CPRF1_PETCR D 0.787
Cucsa.258940 Cucumis sativus Cucsa.258940 I 0.824
Cucsa.312800 Cucumis sativus Cucsa.312800 I 0.783
Cucsa.322110 Cucumis sativus Cucsa.322110 I 0.783
Eucgr.E00078 Eucalyptus grandis Eucgr.E00078 I 0.834
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I 0.783
evm.TU.supercontig_158.7 Carica papaya evm.TU.supercontig_158.7 I 0.796
F775_07803 Aegilops tauschii F775_07803 I 0.862
GBF3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4002338 I 0.829
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I 0.786
gene18928-v1.0-hybrid Fragaria vesca gene18928-v1.0-hybrid I 0.835
gene29546-v1.0-hybrid Fragaria vesca gene29546-v1.0-hybrid I 0.792
gene32022-v1.0-hybrid Fragaria vesca gene32022-v1.0-hybrid I 0.794
GLYMA03G41590 Glycine max GLYMA03G41590 I 0.831
GLYMA07G06620 Glycine max GLYMA07G06620 I 0.857
GLYMA08G34280 Glycine max GLYMA08G34280 I 0.804
GLYMA09G34170 Glycine max GLYMA09G34170 I 0.783
GLYMA16G03190 Glycine max GLYMA16G03190 I 0.858
GLYMA16G15810 Glycine max GLYMA16G15810 I 0.816
GLYMA19G44190 Glycine max GLYMA19G44190 I 0.831
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I 0.783
Gorai.004G153100 Gossypium raimondii Gorai.004G153100 I 0.848
Gorai.007G105100 Gossypium raimondii Gorai.007G105100 I 0.848
Gorai.008G123200 Gossypium raimondii Gorai.008G123200 I 0.848
GRMZM2G011932 Zea mays GRMZM2G011932 I 0.845
GRMZM2G117851 Zea mays GRMZM2G117851 I 0.859
GRMZM2G160136 Zea mays GRMZM2G160136 I 0.845
GRMZM2G358701 Zea mays GRMZM2G358701 I 0.845
GRMZM5G848942 Zea mays GRMZM5G848942 I 0.845
GSMUA_Achr1G05050_001 Musa acuminata GSMUA_Achr1G05050_001 I 0.805
GSMUA_Achr6G32000_001 Musa acuminata GSMUA_Achr6G32000_001 I 0.826
GSMUA_Achr9G05310_001 Musa acuminata GSMUA_Achr9G05310_001 I 0.834
gw1.27.125.1 Physcomitrella patens gw1.27.125.1 I 0.794
gw1.3.298.1 Physcomitrella patens gw1.3.298.1 I 0.782
gw1.33.173.1 Physcomitrella patens gw1.33.173.1 I 0.782
gw2.11.550.1 Micromonas sp RCC299 gw2.11.550.1 I 0.783
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I 0.782
LPERR01G21580 Leersia perrieri LPERR01G21580 I 0.859
LPERR05G21930 Leersia perrieri LPERR05G21930 I 0.859
Lus10003034.g Linum usitatissimum Lus10003034.g I 0.831
Lus10005146.g Linum usitatissimum Lus10005146.g I 0.831
Lus10014324.g Linum usitatissimum Lus10014324.g I 0.784
Lus10026033.g Linum usitatissimum Lus10026033.g I 0.784
MDP0000138052 Malus domestica MDP0000138052 I 0.820
MDP0000231274 Malus domestica MDP0000231274 I 0.794
MDP0000239688 Malus domestica MDP0000239688 I 0.792
MDP0000493795 Malus domestica MDP0000493795 I 0.820
MDP0000545420 Malus domestica MDP0000545420 I 0.820
mgf003302m Mimulus guttatus mgf003302m I 0.833
mgf013423m Mimulus guttatus mgf013423m I 0.833
MLOC_6711 Hordeum vulgare MLOC_6711 I 0.862
MTR_5g028850 Medicago truncatula MTR_5g028850 I 0.783
MTR_7g116890 Medicago truncatula MTR_7g116890 I 0.823
MTR_8g070820 Medicago truncatula MTR_8g070820 I 0.819
OB01G34490 Oryza brachyantha OB01G34490 I 0.859
OB05G33790 Oryza brachyantha OB05G33790 I 0.859
OBART01G25300 Oryza barthii OBART01G25300 I 0.859
OBART05G26280 Oryza barthii OBART05G26280 I 0.859
OGLUM01G29060 Oryza glumaepatula OGLUM01G29060 I 0.859
OGLUM05G27920 Oryza glumaepatula OGLUM05G27920 I 0.859
OLONG_003667 Oryza longistaminata OLONG_003667 I 0.859
OLONG_022047 Oryza longistaminata OLONG_022047 I 0.859
OMERI01G23000 Oryza meridionalis OMERI01G23000 I 0.859
OMERI03G30340 Oryza meridionalis OMERI03G30340 I 0.859
ONIVA01G28540 Oryza nivara ONIVA01G28540 I 0.859
ONIVA05G28290 Oryza nivara ONIVA05G28290 I 0.842
OPUNC01G25140 Oryza punctata OPUNC01G25140 I 0.859
OPUNC02G01690 Oryza punctata OPUNC02G01690 I 0.789
OPUNC05G23850 Oryza punctata OPUNC05G23850 I 0.842
orange1.1g014660m.g Citrus sinensis orange1.1g014660m.g I 0.821
orange1.1g018605m.g Citrus sinensis orange1.1g018605m.g I 0.782
ORGLA01G0206000 Oryza glaberrima ORGLA01G0206000 I 0.859
ORGLA05G0227800 Oryza glaberrima ORGLA05G0227800 I 0.859
ORUFI01G28110 Oryza rufipogon ORUFI01G28110 I 0.859
ORUFI05G28170 Oryza rufipogon ORUFI05G28170 I 0.859
OS01G0658900 Oryza sativa OS01G0658900 I 0.859
OS05G0569300 Oryza sativa OS05G0569300 I 0.859
Pavir.Ca00968 Panicum virgatum Pavir.Ca00968 I 0.844
Pavir.Ea02315 Panicum virgatum Pavir.Ea02315 I 0.859
PDK_20s1349941g001 Phoenix dactylifera PDK_20s1349941g001 I 0.827
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I 0.783
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I 0.786
PGSC0003DMG400000088 Solanum tuberosum PGSC0003DMG400000088 I 0.806
PGSC0003DMG400012660 Solanum tuberosum PGSC0003DMG400012660 I 0.794
PGSC0003DMG400033876 Solanum tuberosum PGSC0003DMG400033876 I 0.815
PK07494.1 Cannabis sativa PK07494.1 I 0.785
PK09653.1 Cannabis sativa PK09653.1 D 0.848
Pm018422 Prunus mume Pm018422 I 0.820
Pm024103 Prunus mume Pm024103 I 0.791
Pm026586 Prunus mume Pm026586 I 0.782
POPTR_0002s16870 Populus trichocarpa POPTR_0002s16870 I 0.829
POPTR_0005s12750 Populus trichocarpa POPTR_0005s12750 I 0.789
POPTR_0007s12460 Populus trichocarpa POPTR_0007s12460 I 0.789
POPTR_0014s08990 Populus trichocarpa POPTR_0014s08990 I 0.811
PRUPE_ppa006173mg Prunus persica PRUPE_ppa006173mg I 0.820
PRUPE_ppa008024mg Prunus persica PRUPE_ppa008024mg I 0.782
PRUPE_ppa020524mg Prunus persica PRUPE_ppa020524mg I 0.791
Q40645_ORYSA Oryza sativa Q40645_ORYSA D 0.859
Q41109_PHAVU Phaseolus vulgaris Q41109_PHAVU D 0.858
SapurV1A.0013s0770 Salix purpurea SapurV1A.0013s0770 I 0.812
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I 0.783
SapurV1A.0255s0070 Salix purpurea SapurV1A.0255s0070 I 0.788
SapurV1A.0817s0110 Salix purpurea SapurV1A.0817s0110 I 0.785
Sb03g030050 Sorghum bicolor Sb03g030050 I 0.859
Sb09g028990 Sorghum bicolor Sb09g028990 I 0.862
GBF1 Arabidopsis lyrata scaffold_700433.1 I 0.808
SELMODRAFT_135978 Selaginella moellendorffii SELMODRAFT_135978 I 0.807
Si001929m.g Setaria italica Si001929m.g I 0.859
Si022388m.g Setaria italica Si022388m.g I 0.862
Solyc01g095460.2 Solanum lycopersicum Solyc01g095460.2 I 0.806
Solyc02g085610.2 Solanum lycopersicum Solyc02g085610.2 I 0.794
Solyc05g050220.2 Solanum lycopersicum Solyc05g050220.2 I 0.815
TAF1_TOBAC Nicotiana tabacum TAF1_TOBAC D 0.815
TCM_005210 Theobroma cacao TCM_005210 I 0.848
Thhalv10001533m.g Eutrema salsugineum Thhalv10001533m.g I 0.829
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I 0.786
Thhalv10016740m.g Eutrema salsugineum Thhalv10016740m.g I 0.794
Thhalv10025733m.g Eutrema salsugineum Thhalv10025733m.g I 0.821
Thhalv10028761m.g Eutrema salsugineum Thhalv10028761m.g I 0.833
Traes_1AL_F18EC96DF Triticum aestivum Traes_1AL_F18EC96DF I 0.862
Traes_1BL_C5FEAF06E Triticum aestivum Traes_1BL_C5FEAF06E I 0.862
Traes_1DL_23D036A85 Triticum aestivum Traes_1DL_23D036A85 I 0.862
TRIUR3_18341 Triticum urartu TRIUR3_18341 I 0.862
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I 0.783
VIT_02s0025g01020 Vitis vinifera VIT_02s0025g01020 I 0.799
GBF1 Vitis vinifera VIT_04s0023g01360 I 0.782
VIT_15s0046g01440 Vitis vinifera VIT_15s0046g01440 I 0.805