bcl11aa (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000061352 T090979_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.815 0.965
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.815 0.965
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.815 0.965
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.811 0.956
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.811 0.956
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000081860 C2H2 ZF 357 378
ENSDARP00000081860 C2H2 ZF 384 406
ENSDARP00000081860 C2H2 ZF 736 758
ENSDARP00000081860 C2H2 ZF 764 786
ENSDARP00000081860 C2H2 ZF 794 817

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29417.m000034 Ricinus communis 29417.m000034 N
30174.m008836 Ricinus communis 30174.m008836 N
AMTR_s00059p00116150 Amborella trichopoda AMTR_s00059p00116150 N
Aquca_013_00703 Aquilegia coerulea Aquca_013_00703 N
AT3G60670 Arabidopsis thaliana AT3G60670 N
BGIOSGA007635 Oryza indica BGIOSGA007635 N
BGIOSGA023427 Oryza indica BGIOSGA023427 N
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N
cassava11490.m1 Manihot esculenta cassava11490.m1 N
cassava14439.m1 Manihot esculenta cassava14439.m1 N
cassava17724.valid.m1 Manihot esculenta cassava17724.valid.m1 N
Ciclev10021750m.g Citrus clementina Ciclev10021750m.g N
Cla006768 Citrullus lanatus Cla006768 N
Cucsa.120560 Cucumis sativus Cucsa.120560 N
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N
Eucgr.E01501 Eucalyptus grandis Eucgr.E01501 N
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N
evm.TU.supercontig_29.132 Carica papaya evm.TU.supercontig_29.132 N
fgenesh2_kg.5__2532__AT3G60670.1 Arabidopsis lyrata fgenesh2_kg.5__2532__AT3G60670.1 N
GLYMA01G17580 Glycine max GLYMA01G17580 N
GLYMA11G17770 Glycine max GLYMA11G17770 N
GLYMA15G17040 Glycine max GLYMA15G17040 N
Gorai.003G169800 Gossypium raimondii Gorai.003G169800 N
Gorai.004G163500 Gossypium raimondii Gorai.004G163500 N
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N
Gorai.008G237000 Gossypium raimondii Gorai.008G237000 N
GRMZM2G017882 Zea mays GRMZM2G017882 N
GSMUA_Achr11G04210_001 Musa acuminata GSMUA_Achr11G04210_001 N
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N
LPERR06G19930 Leersia perrieri LPERR06G19930 N
MLOC_21744 Hordeum vulgare MLOC_21744 N
OB02G14750 Oryza brachyantha OB02G14750 N
OBART02G05520 Oryza barthii OBART02G05520 N
OBART06G24000 Oryza barthii OBART06G24000 N
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N
OLONG_011712 Oryza longistaminata OLONG_011712 N
OLONG_022199 Oryza longistaminata OLONG_022199 N
OMERI06G23930 Oryza meridionalis OMERI06G23930 N
ONIVA02G05860 Oryza nivara ONIVA02G05860 N
ONIVA03G43780 Oryza nivara ONIVA03G43780 N
OPUNC02G04680 Oryza punctata OPUNC02G04680 N
OPUNC06G21750 Oryza punctata OPUNC06G21750 N
orange1.1g035685m.g Citrus sinensis orange1.1g035685m.g N
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N
OS02G0172800 Oryza sativa OS02G0172800 N
OS06G0666100 Oryza sativa OS06G0666100 N
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N
PK01122.1 Cannabis sativa PK01122.1 N
Pm017841 Prunus mume Pm017841 N
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N
PRUPE_ppa023785mg Prunus persica PRUPE_ppa023785mg N
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N
Sb04g004830 Sorghum bicolor Sb04g004830 N
Sb10g026620 Sorghum bicolor Sb10g026620 N
Si018139m.g Setaria italica Si018139m.g N
Solyc01g091000.2 Solanum lycopersicum Solyc01g091000.2 N
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N
TCM_005554 Theobroma cacao TCM_005554 N
TCM_016018 Theobroma cacao TCM_016018 N
Thhalv10006374m.g Eutrema salsugineum Thhalv10006374m.g N
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N
TRIUR3_33737 Triticum urartu TRIUR3_33737 N
VIT_00s0233g00100 Vitis vinifera VIT_00s0233g00100 N
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N
VIT_02s0154g00150 Vitis vinifera VIT_02s0154g00150 N
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N