gfi1b (Oryzias latipes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSORLG00000014390 T104923_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.787 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.787 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.787 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.787 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.787 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.787 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.785 0.877
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.785 0.877
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.785 0.877
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.777 0.877
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.772 0.870
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.772 0.870
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.772 0.870
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.772 0.870
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.772 0.870
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.772 0.870
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.772 0.870
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.772 0.870
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.772 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000018038 C2H2 ZF 171 194
ENSORLP00000018038 C2H2 ZF 200 222
ENSORLP00000018038 C2H2 ZF 228 250
ENSORLP00000018038 C2H2 ZF 256 278
ENSORLP00000018038 C2H2 ZF 284 306
ENSORLP00000018038 C2H2 ZF 312 335

Links

Other C2H2 ZF family TFs
Other Oryzias latipes TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29596.m000719 Ricinus communis 29596.m000719 N
29838.m001723 Ricinus communis 29838.m001723 N
Aquca_007_00525 Aquilegia coerulea Aquca_007_00525 N
GATA18 Oryza indica BGIOSGA010036 N
Bostr.15774s0100 Boechera stricta Bostr.15774s0100 N
BRADI1G12330 Brachypodium distachyon BRADI1G12330 N
cassava1723.valid.m1 Manihot esculenta cassava1723.valid.m1 N
cassava2865.m1 Manihot esculenta cassava2865.m1 N
cassava6877.valid.m1 Manihot esculenta cassava6877.valid.m1 N
Ca_01470 Cicer arietinum Ca_01470 N
Ciclev10001533m.g Citrus clementina Ciclev10001533m.g N
Ciclev10028671m.g Citrus clementina Ciclev10028671m.g N
Cla022485 Citrullus lanatus Cla022485 N
Cucsa.160520 Cucumis sativus Cucsa.160520 N
Eucgr.F00433 Eucalyptus grandis Eucgr.F00433 N
evm.TU.supercontig_21.35 Carica papaya evm.TU.supercontig_21.35 N
F775_05698 Aegilops tauschii F775_05698 N
F775_32334 Aegilops tauschii F775_32334 N
gene26538-v1.0-hybrid Fragaria vesca gene26538-v1.0-hybrid N
GLYMA04G10340 Glycine max GLYMA04G10340 N
GLYMA06G10290 Glycine max GLYMA06G10290 N
Gorai.002G138300 Gossypium raimondii Gorai.002G138300 N
Gorai.005G226000 Gossypium raimondii Gorai.005G226000 N
Gorai.010G033400 Gossypium raimondii Gorai.010G033400 N
LjT45A20.140.nd Lotus japonicus LjT45A20.140.nd N
LPERR03G24620 Leersia perrieri LPERR03G24620 N
MDP0000192617 Malus domestica MDP0000192617 N
mgf001782m Mimulus guttatus mgf001782m N
MLOC_57142 Hordeum vulgare MLOC_57142 N
MLOC_6017 Hordeum vulgare MLOC_6017 N
MTR_3g100040 Medicago truncatula MTR_3g100040 N
OBART03G29860 Oryza barthii OBART03G29860 N
OGLUM03G30120 Oryza glumaepatula OGLUM03G30120 N
OLONG_006862 Oryza longistaminata OLONG_006862 N
OMERI03G26130 Oryza meridionalis OMERI03G26130 N
ONIVA03G31130 Oryza nivara ONIVA03G31130 N
OPUNC03G27170 Oryza punctata OPUNC03G27170 N
orange1.1g017195m.g Citrus sinensis orange1.1g017195m.g N
orange1.1g017348m.g Citrus sinensis orange1.1g017348m.g N
ORGLA01G0401200 Oryza glaberrima ORGLA01G0401200 N
ORUFI03G31080 Oryza rufipogon ORUFI03G31080 N
GATA18 Oryza sativa OS03G0684000 N
Pavir.Ib04266 Panicum virgatum Pavir.Ib04266 N
Pavir.J38243 Panicum virgatum Pavir.J38243 N
PGSC0003DMG400009353 Solanum tuberosum PGSC0003DMG400009353 N
PGSC0003DMG400010684 Solanum tuberosum PGSC0003DMG400010684 N
PK22222.1 Cannabis sativa PK22222.1 N
Pm004389 Prunus mume Pm004389 N
XM_002302327.1 Populus trichocarpa POPTR_0002s11140 N
POPTR_0005s19550 Populus trichocarpa POPTR_0005s19550 N
POPTR_0007s03120 Populus trichocarpa POPTR_0007s03120 N
POPTR_0017s06970 Populus trichocarpa POPTR_0017s06970 N
PRUPE_ppa008377mg Prunus persica PRUPE_ppa008377mg N
SapurV1A.0004s0640 Salix purpurea SapurV1A.0004s0640 N
SapurV1A.0187s0160 Salix purpurea SapurV1A.0187s0160 N
SapurV1A.1216s0090 Salix purpurea SapurV1A.1216s0090 N
Sb01g011840 Sorghum bicolor Sb01g011840 N
Si036492m.g Setaria italica Si036492m.g N
Solyc01g106040.2 Solanum lycopersicum Solyc01g106040.2 N
TCM_007358 Theobroma cacao TCM_007358 N
TCM_034531 Theobroma cacao TCM_034531 N
Traes_4AL_B6992AAA6 Triticum aestivum Traes_4AL_B6992AAA6 N
Traes_4BS_ACD70539F Triticum aestivum Traes_4BS_ACD70539F N
Traes_4DS_AFCEDDE67 Triticum aestivum Traes_4DS_AFCEDDE67 N
TRIUR3_15386 Triticum urartu TRIUR3_15386 N
TRIUR3_23258 Triticum urartu TRIUR3_23258 N
VIT_18s0001g07730 Vitis vinifera VIT_18s0001g07730 N