CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.005G226000
(
Gossypium raimondii
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
Gorai.005G226000
T196592_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.005G226000.1
GATA
184
221
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKGTL
Gorai.005G226000.2
GATA
184
221
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKGTL
Gorai.005G226000.3
GATA
182
219
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKGTL
Gorai.005G226000.4
GATA
181
218
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKGTL
Gorai.005G226000.5
GATA
184
221
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKGTL
Gorai.005G226000.6
GATA
184
220
CQHCGINEKLTPAMRRGPAGPRTLCNACGLMWANKVG
Links
Other
GATA
family TFs
Other
Gossypium raimondii
TFs
67 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_3g100040
Medicago truncatula
MTR_3g100040
N
0.862
POPTR_0007s03120
Populus trichocarpa
POPTR_0007s03120
N
0.862
POPTR_0017s06970
Populus trichocarpa
POPTR_0017s06970
N
0.862
TCM_007358
Theobroma cacao
TCM_007358
N
0.862
Ca_01470
Cicer arietinum
Ca_01470
N
0.862
cassava1723.valid.m1
Manihot esculenta
cassava1723.valid.m1
N
0.862
cassava6877.valid.m1
Manihot esculenta
cassava6877.valid.m1
N
0.862
Bostr.15774s0100
Boechera stricta
Bostr.15774s0100
N
0.862
Ciclev10028671m.g
Citrus clementina
Ciclev10028671m.g
N
0.862
orange1.1g017195m.g
Citrus sinensis
orange1.1g017195m.g
N
0.862
SapurV1A.1216s0090
Salix purpurea
SapurV1A.1216s0090
N
0.862
GLYMA04G10340
Glycine max
GLYMA04G10340
N
0.857
GLYMA06G10290
Glycine max
GLYMA06G10290
N
0.857
XM_002302327.1
Populus trichocarpa
POPTR_0002s11140
N
0.857
POPTR_0005s19550
Populus trichocarpa
POPTR_0005s19550
N
0.857
PRUPE_ppa008377mg
Prunus persica
PRUPE_ppa008377mg
N
0.857
TCM_034531
Theobroma cacao
TCM_034531
N
0.857
VIT_18s0001g07730
Vitis vinifera
VIT_18s0001g07730
N
0.857
Cla022485
Citrullus lanatus
Cla022485
N
0.857
Pm004389
Prunus mume
Pm004389
N
0.857
29596.m000719
Ricinus communis
29596.m000719
N
0.857
29838.m001723
Ricinus communis
29838.m001723
N
0.857
cassava2865.m1
Manihot esculenta
cassava2865.m1
N
0.857
Cucsa.160520
Cucumis sativus
Cucsa.160520
N
0.857
mgf001782m
Mimulus guttatus
mgf001782m
N
0.857
Ciclev10001533m.g
Citrus clementina
Ciclev10001533m.g
N
0.857
Eucgr.F00433
Eucalyptus grandis
Eucgr.F00433
N
0.857
evm.TU.supercontig_21.35
Carica papaya
evm.TU.supercontig_21.35
N
0.857
gene26538-v1.0-hybrid
Fragaria vesca
gene26538-v1.0-hybrid
N
0.857
Gorai.002G138300
Gossypium raimondii
Gorai.002G138300
N
0.857
Gorai.010G033400
Gossypium raimondii
Gorai.010G033400
N
0.857
MDP0000192617
Malus domestica
MDP0000192617
N
0.857
orange1.1g017348m.g
Citrus sinensis
orange1.1g017348m.g
N
0.857
SapurV1A.0004s0640
Salix purpurea
SapurV1A.0004s0640
N
0.857
SapurV1A.0187s0160
Salix purpurea
SapurV1A.0187s0160
N
0.857
PK22222.1
Cannabis sativa
PK22222.1
N
0.857
PGSC0003DMG400010684
Solanum tuberosum
PGSC0003DMG400010684
N
0.851
Solyc01g106040.2
Solanum lycopersicum
Solyc01g106040.2
N
0.851
Aquca_007_00525
Aquilegia coerulea
Aquca_007_00525
N
0.847
LjT45A20.140.nd
Lotus japonicus
LjT45A20.140.nd
N
0.847
PGSC0003DMG400009353
Solanum tuberosum
PGSC0003DMG400009353
N
0.832
F775_32334
Aegilops tauschii
F775_32334
N
0.831
GATA18
Oryza indica
BGIOSGA010036
N
0.827
BRADI1G12330
Brachypodium distachyon
BRADI1G12330
N
0.827
LPERR03G24620
Leersia perrieri
LPERR03G24620
N
0.827
MLOC_57142
Hordeum vulgare
MLOC_57142
N
0.827
MLOC_6017
Hordeum vulgare
MLOC_6017
N
0.827
OBART03G29860
Oryza barthii
OBART03G29860
N
0.827
OGLUM03G30120
Oryza glumaepatula
OGLUM03G30120
N
0.827
OLONG_006862
Oryza longistaminata
OLONG_006862
N
0.827
OMERI03G26130
Oryza meridionalis
OMERI03G26130
N
0.827
ONIVA03G31130
Oryza nivara
ONIVA03G31130
N
0.827
OPUNC03G27170
Oryza punctata
OPUNC03G27170
N
0.827
ORGLA01G0401200
Oryza glaberrima
ORGLA01G0401200
N
0.827
ORUFI03G31080
Oryza rufipogon
ORUFI03G31080
N
0.827
GATA18
Oryza sativa
OS03G0684000
N
0.827
Sb01g011840
Sorghum bicolor
Sb01g011840
N
0.827
Si036492m.g
Setaria italica
Si036492m.g
N
0.827
Traes_4AL_B6992AAA6
Triticum aestivum
Traes_4AL_B6992AAA6
N
0.827
Traes_4BS_ACD70539F
Triticum aestivum
Traes_4BS_ACD70539F
N
0.827
Traes_4DS_AFCEDDE67
Triticum aestivum
Traes_4DS_AFCEDDE67
N
0.827
TRIUR3_23258
Triticum urartu
TRIUR3_23258
N
0.827
Pavir.Ib04266
Panicum virgatum
Pavir.Ib04266
N
0.827
Pavir.J38243
Panicum virgatum
Pavir.J38243
N
0.827
F775_05698
Aegilops tauschii
F775_05698
N
0.825
TRIUR3_15386
Triticum urartu
TRIUR3_15386
N
0.825