SNAI1 (Pteropus vampyrus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPVAG00000004119 T108518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.819 0.945
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.819 0.945
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.819 0.945
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.819 0.945
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.819 0.945
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.819 0.945
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.819 0.945
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.819 0.945
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.816 0.923
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.816 0.923
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000003898 C2H2 ZF 156 178
ENSPVAP00000003898 C2H2 ZF 182 204
ENSPVAP00000003898 C2H2 ZF 210 232
ENSPVAP00000003898 C2H2 ZF 238 259

Links

Other C2H2 ZF family TFs
Other Pteropus vampyrus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003131 Ricinus communis 29983.m003131 I
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I
GPRI1 Arabidopsis thaliana AT2G20570 D
GLK2 Arabidopsis thaliana AT5G44190 I
BGIOSGA002040 Oryza indica BGIOSGA002040 I
BGIOSGA022875 Oryza indica BGIOSGA022875 I
Bo7g003410 Brassica oleracea Bo7g003410 I
Bo8g102300 Brassica oleracea Bo8g102300 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Bra031129 Brassica rapa Bra031129 I
Bra036015 Brassica rapa Bra036015 I
Bra036482 Brassica rapa Bra036482 I
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
cassava9823.m1 Manihot esculenta cassava9823.m1 I
Ca_02452 Cicer arietinum Ca_02452 I
Ca_11268 Cicer arietinum Ca_11268 I
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Cla003791 Citrullus lanatus Cla003791 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
Cucsa.313480 Cucumis sativus Cucsa.313480 I
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I
F775_20285 Aegilops tauschii F775_20285 I
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
GLYMA01G40900 Glycine max GLYMA01G40900 I
GLYMA06G44330 Glycine max GLYMA06G44330 I
GLYMA11G04441 Glycine max GLYMA11G04441 I
GLYMA12G13430 Glycine max GLYMA12G13430 I
GLYMA12G33430 Glycine max GLYMA12G33430 I
GLYMA13G37010 Glycine max GLYMA13G37010 I
GLYMA17G16360 Glycine max GLYMA17G16360 I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
GRMZM2G026833 Zea mays GRMZM2G026833 I
GRMZM2G087804 Zea mays GRMZM2G087804 I
GRMZM2G471600 Zea mays GRMZM2G471600 I
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I
LPERR01G08320 Leersia perrieri LPERR01G08320 I
LPERR06G12880 Leersia perrieri LPERR06G12880 I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
MDP0000225179 Malus domestica MDP0000225179 I
MDP0000526864 Malus domestica MDP0000526864 I
mgf004257m Mimulus guttatus mgf004257m I
mgf007181m Mimulus guttatus mgf007181m I
mgf012846m Mimulus guttatus mgf012846m I
mgf014879m Mimulus guttatus mgf014879m I
MLOC_43537 Hordeum vulgare MLOC_43537 I
MLOC_65876 Hordeum vulgare MLOC_65876 I
MTR_2g090675 Medicago truncatula MTR_2g090675 I
MTR_4g078810 Medicago truncatula MTR_4g078810 I
OB01G18980 Oryza brachyantha OB01G18980 I
OB06G22250 Oryza brachyantha OB06G22250 I
OBART03G02540 Oryza barthii OBART03G02540 I
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I
OMERI01G08840 Oryza meridionalis OMERI01G08840 I
OMERI06G15340 Oryza meridionalis OMERI06G15340 I
ONIVA01G11450 Oryza nivara ONIVA01G11450 I
ONIVA06G16920 Oryza nivara ONIVA06G16920 I
OPUNC01G08680 Oryza punctata OPUNC01G08680 I
OPUNC06G13180 Oryza punctata OPUNC06G13180 I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I
GLK2 Oryza sativa OS01G0239000 I
GLK1 Oryza sativa OS06G0348800 I
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I
Pavir.J11422 Panicum virgatum Pavir.J11422 I
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I
PK27491.1 Cannabis sativa PK27491.1 I
Pm014123 Prunus mume Pm014123 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
Sb03g000400 Sorghum bicolor Sb03g000400 I
Sb10g008400 Sorghum bicolor Sb10g008400 I
Si001336m.g Setaria italica Si001336m.g I
Si006400m.g Setaria italica Si006400m.g I
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I
TCM_008193 Theobroma cacao TCM_008193 I
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I
TRIUR3_15856 Triticum urartu TRIUR3_15856 I
GPRI1 Vitis vinifera VIT_12s0028g03100 I