fgenesh2_kg.6__2821__AT4G06634.1 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh2_kg.6__2821__AT4G06634.1 T117368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.818 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__2821__AT4G06634.1 C2H2 ZF 79 103
fgenesh2_kg.6__2821__AT4G06634.1 C2H2 ZF 108 132
fgenesh2_kg.6__2821__AT4G06634.1 C2H2 ZF 138 162
fgenesh2_kg.6__2821__AT4G06634.1 C2H2 ZF 168 193
fgenesh2_kg.6__2821__AT4G06634.1 C2H2 ZF 230 255

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action