NEMVEDRAFT_v1g121215 (Nematostella vectensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 NEMVEDRAFT_v1g121215 T124165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.768 0.870
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.768 0.870
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.768 0.870
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.768 0.870
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.768 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35944 C2H2 ZF 70 97
EDO35944 C2H2 ZF 103 127
EDO35944 C2H2 ZF 133 157
EDO35944 C2H2 ZF 163 187

Links

Other C2H2 ZF family TFs
Other Nematostella vectensis TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I 0.761
BXY_1106000 Bursaphelenchus xylophilus BXY_1106000 I 0.761
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.761
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.762
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.783
csin109208 Clonorchis sinensis csin109208 I 0.757
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.756
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.780
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.779
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.775
macho1 Ciona intestinalis ENSCING00000007968 I 0.774
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.774
zic6 Danio rerio ENSDARG00000071496 I 0.775
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.783
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.778
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.783
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.756
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.780
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.783
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.775
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.783
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.763
ENSPFOG00000023954 Poecilia formosa ENSPFOG00000023954 I 0.767
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.783
ENSPSIG00000011885 Pelodiscus sinensis ENSPSIG00000011885 I 0.765
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.768
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.783
ENSXMAG00000014868 Xiphophorus maculatus ENSXMAG00000014868 I 0.767
opa Drosophila melanogaster FBgn0003002 D 0.768
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.768
GF18915 Drosophila ananassae FBgn0095929 I 0.768
GG12590 Drosophila erecta FBgn0104878 I 0.768
GH23039 Drosophila grimshawi FBgn0130496 I 0.768
GI10245 Drosophila mojavensis FBgn0133010 I 0.768
GL21621 Drosophila persimilis FBgn0159214 I 0.768
GM10780 Drosophila sechellia FBgn0165726 I 0.768
GD19752 Drosophila simulans FBgn0191241 I 0.768
GJ11051 Drosophila virilis FBgn0198317 I 0.768
GK13239 Drosophila willistoni FBgn0215248 I 0.768
KGM_22387 Danaus plexippus KGM_22387 I 0.756
MDOA000052 Musca domestica MDOA000052 I 0.771
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.790
nLs.2.1.2.g02824 Litomosoides sigmodontis nLs.2.1.2.g02824 I 0.765
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.759
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.780
PTRK_0000799900 Parastrongyloides trichosuri PTRK_0000799900 I 0.758
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.773
RSKR_0001155900 Rhabditophanes kr3021 RSKR_0001155900 I 0.758
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.761
T265_00048 Opisthorchis viverrini T265_00048 I 0.757
TC010234 Tribolium castaneum TC010234 I 0.756
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.771
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.765
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.791
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.765