SMAR002904 (Strigamia maritima)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SMAR002904 T129048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.797 0.922
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.797 0.922
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.797 0.922
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.797 0.922
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.793 0.904
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.793 0.904
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.793 0.904
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.793 0.904
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.790 0.913
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.790 0.913
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.790 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR002904-PA C2H2 ZF 197 219
SMAR002904-PA C2H2 ZF 225 247
SMAR002904-PA C2H2 ZF 253 275
SMAR002904-PA C2H2 ZF 281 303
SMAR002904-PA C2H2 ZF 309 331

Links

Other C2H2 ZF family TFs
Other Strigamia maritima TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29940.m000398 Ricinus communis 29940.m000398 I 0.000
AMTR_s00101p00121930 Amborella trichopoda AMTR_s00101p00121930 I 0.000
Aquca_009_00077 Aquilegia coerulea Aquca_009_00077 I 0.000
BZIP17 Arabidopsis thaliana AT2G40950 D 0.000
BZIP49 Arabidopsis thaliana AT3G56660 I 0.000
BGIOSGA018059 Oryza indica BGIOSGA018059 I 0.000
Bo4g012880 Brassica oleracea Bo4g012880 I 0.000
Bo4g112860 Brassica oleracea Bo4g112860 N 0.000
Bo4g190610 Brassica oleracea Bo4g190610 I 0.000
Bostr.9345s0037 Boechera stricta Bostr.9345s0037 I 0.000
Bra016959 Brassica rapa Bra016959 I 0.000
Bra023224 Brassica rapa Bra023224 I 0.000
Bra034147 Brassica rapa Bra034147 I 0.000
BRADI2G25400 Brachypodium distachyon BRADI2G25400 I 0.000
Cagra.1642s0060 Capsella grandiflora Cagra.1642s0060 I 0.000
Carubv10022722m.g Capsella rubella Carubv10022722m.g I 0.000
cassava24522.valid.m1 Manihot esculenta cassava24522.valid.m1 I 0.000
cassava31134.valid.m1 Manihot esculenta cassava31134.valid.m1 I 0.000
Ca_08103 Cicer arietinum Ca_08103 I 0.000
chr1.CM0269.100.nd Lotus japonicus chr1.CM0269.100.nd I 0.000
Ciclev10011169m.g Citrus clementina Ciclev10011169m.g I 0.000
Cla017717 Citrullus lanatus Cla017717 I 0.000
Cucsa.337510 Cucumis sativus Cucsa.337510 I 0.000
Eucgr.A02199 Eucalyptus grandis Eucgr.A02199 I 0.000
evm.TU.supercontig_92.68 Carica papaya evm.TU.supercontig_92.68 I 0.000
e_gw1.25.198.1 Physcomitrella patens e_gw1.25.198.1 I 0.000
F775_10026 Aegilops tauschii F775_10026 I 0.000
BZIP49 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001722 I 0.000
gene03633-v1.0-hybrid Fragaria vesca gene03633-v1.0-hybrid I 0.000
GLYMA03G27865 Glycine max GLYMA03G27865 I 0.000
GLYMA19G30681 Glycine max GLYMA19G30681 I 0.000
Gorai.013G000800 Gossypium raimondii Gorai.013G000800 I 0.000
GRMZM2G045236 Zea mays GRMZM2G045236 I 0.000
GSMUA_Achr11G25190_001 Musa acuminata GSMUA_Achr11G25190_001 I 0.000
gw1.158.68.1 Physcomitrella patens gw1.158.68.1 I 0.000
LPERR05G13000 Leersia perrieri LPERR05G13000 I 0.000
Lus10010440.g Linum usitatissimum Lus10010440.g I 0.000
Lus10012104.g Linum usitatissimum Lus10012104.g I 0.000
Lus10027290.g Linum usitatissimum Lus10027290.g I 0.000
MDP0000138811 Malus domestica MDP0000138811 I 0.000
MDP0000180785 Malus domestica MDP0000180785 I 0.000
MDP0000270677 Malus domestica MDP0000270677 I 0.000
MDP0000299504 Malus domestica MDP0000299504 I 0.000
mgf002378m Mimulus guttatus mgf002378m I 0.000
mgf013640m Mimulus guttatus mgf013640m I 0.000
MLOC_42759 Hordeum vulgare MLOC_42759 I 0.000
MTR_7g088890 Medicago truncatula MTR_7g088890 I 0.000
OB05G24300 Oryza brachyantha OB05G24300 I 0.000
OGLUM05G17320 Oryza glumaepatula OGLUM05G17320 I 0.000
ONIVA05G17010 Oryza nivara ONIVA05G17010 I 0.000
OPUNC05G14460 Oryza punctata OPUNC05G14460 I 0.000
orange1.1g035544m.g Citrus sinensis orange1.1g035544m.g I 0.000
ORGLA05G0141100 Oryza glaberrima ORGLA05G0141100 I 0.000
ORUFI05G17550 Oryza rufipogon ORUFI05G17550 I 0.000
BZIP39 Oryza sativa OS05G0411300 I 0.000
Pavir.J00385 Panicum virgatum Pavir.J00385 I 0.000
Pavir.J18543 Panicum virgatum Pavir.J18543 I 0.000
PGSC0003DMG400007175 Solanum tuberosum PGSC0003DMG400007175 I 0.000
PK07115.1 Cannabis sativa PK07115.1 I 0.000
Pm016493 Prunus mume Pm016493 I 0.000
POPTR_0006s03300 Populus trichocarpa POPTR_0006s03300 I 0.000
POPTR_0016s03220 Populus trichocarpa POPTR_0016s03220 I 0.000
PRUPE_ppa002181mg Prunus persica PRUPE_ppa002181mg I 0.000
SapurV1A.0159s0210 Salix purpurea SapurV1A.0159s0210 I 0.000
SapurV1A.1072s0100 Salix purpurea SapurV1A.1072s0100 I 0.000
Sb09g020320 Sorghum bicolor Sb09g020320 I 0.000
BZIP17 Arabidopsis lyrata scaffold_402899.1 I 0.000
Si021442m.g Setaria italica Si021442m.g I 0.000
Solyc10g078290.1 Solanum lycopersicum Solyc10g078290.1 I 0.000
TCM_023889 Theobroma cacao TCM_023889 I 0.000
TGA1B_TOBAC Nicotiana tabacum TGA1B_TOBAC D 0.000
Thhalv10005827m.g Eutrema salsugineum Thhalv10005827m.g I 0.000
Thhalv10016317m.g Eutrema salsugineum Thhalv10016317m.g I 0.000
TRIUR3_02784 Triticum urartu TRIUR3_02784 I 0.000
VIT_08s0040g00870 Vitis vinifera VIT_08s0040g00870 I 0.000