Solyc06g072360.2 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc06g072360.2 T129374_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.811 0.952
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.811 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g072360.2.1 C2H2 ZF 125 146
Solyc06g072360.2.1 C2H2 ZF 146 171

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.000
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.000
TCM_025670 Theobroma cacao TCM_025670 I 0.000
TCM_025671 Theobroma cacao TCM_025671 I 0.000