Alligator_sinensis_CCG020374.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG020374.1 T133440_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.827 1.000
Osr1
M00144_2.00 		Mus musculus
NVCTHCYNN
NNRGDAGBN		 PBM
Badis et al.(2009)
Osr1_3033 		0.811 0.986
Osr1
M01174_2.00 		Mus musculus
GCTACYGT
ACRGTAGC		 PBM
Lambert et al.(2019)
pTH5339 		0.811 0.986
OSR1
M04477_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX 		0.811 0.986
OSR1
M04478_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX 		0.811 0.986
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.770 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020374.1 C2H2 ZF 172 194
Alligator_sinensis_CCG020374.1 C2H2 ZF 200 222
Alligator_sinensis_CCG020374.1 C2H2 ZF 228 250

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29417.m000034 Ricinus communis 29417.m000034 N 0.000
AMTR_s00032p00241350 Amborella trichopoda AMTR_s00032p00241350 N 0.000
AT1G31040 Arabidopsis thaliana AT1G31040 N 0.000
BGIOSGA007635 Oryza indica BGIOSGA007635 N 0.000
BGIOSGA023427 Oryza indica BGIOSGA023427 N 0.000
Bo2g121040 Brassica oleracea Bo2g121040 N 0.000
Bo7g041160 Brassica oleracea Bo7g041160 N 0.000
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N 0.000
Bra014899 Brassica rapa Bra014899 N 0.000
Bra038403 Brassica rapa Bra038403 N 0.000
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N 0.000
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N 0.000
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N 0.000
Carubv10011663m.g Capsella rubella Carubv10011663m.g N 0.000
cassava11490.m1 Manihot esculenta cassava11490.m1 N 0.000
Ciclev10016385m.g Citrus clementina Ciclev10016385m.g N 0.000
Cla010042 Citrullus lanatus Cla010042 N 0.000
Cla019628 Citrullus lanatus Cla019628 N 0.000
Cucsa.048750 Cucumis sativus Cucsa.048750 N 0.000
Cucsa.134530 Cucumis sativus Cucsa.134530 N 0.000
Eucgr.D00032 Eucalyptus grandis Eucgr.D00032 N 0.000
Eucgr.E04309 Eucalyptus grandis Eucgr.E04309 N 0.000
evm.TU.supercontig_30.133 Carica papaya evm.TU.supercontig_30.133 N 0.000
F775_02274 Aegilops tauschii F775_02274 N 0.000
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N 0.000
gene19989-v1.0-hybrid Fragaria vesca gene19989-v1.0-hybrid N 0.000
GLYMA05G26271 Glycine max GLYMA05G26271 N 0.000
GLYMA08G09191 Glycine max GLYMA08G09191 N 0.000
GLYMA09G05781 Glycine max GLYMA09G05781 N 0.000
GLYMA15G17040 Glycine max GLYMA15G17040 N 0.000
GRMZM2G017882 Zea mays GRMZM2G017882 N 0.000
GSMUA_Achr2G02580_001 Musa acuminata GSMUA_Achr2G02580_001 N 0.000
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N 0.000
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N 0.000
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N 0.000
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N 0.000
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N 0.000
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N 0.000
LPERR06G19930 Leersia perrieri LPERR06G19930 N 0.000
Lus10036226.g Linum usitatissimum Lus10036226.g N 0.000
Lus10038365.g Linum usitatissimum Lus10038365.g N 0.000
MDP0000197021 Malus domestica MDP0000197021 N 0.000
mgf021599m Mimulus guttatus mgf021599m N 0.000
MLOC_21744 Hordeum vulgare MLOC_21744 N 0.000
MTR_4g094680 Medicago truncatula MTR_4g094680 N 0.000
OB02G14750 Oryza brachyantha OB02G14750 N 0.000
OBART02G05520 Oryza barthii OBART02G05520 N 0.000
OBART06G24000 Oryza barthii OBART06G24000 N 0.000
OGLUM02G05380 Oryza glumaepatula OGLUM02G05380 N 0.000
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N 0.000
OLONG_011712 Oryza longistaminata OLONG_011712 N 0.000
OMERI06G23930 Oryza meridionalis OMERI06G23930 N 0.000
ONIVA02G05860 Oryza nivara ONIVA02G05860 N 0.000
ONIVA03G43780 Oryza nivara ONIVA03G43780 N 0.000
OPUNC02G04680 Oryza punctata OPUNC02G04680 N 0.000
OPUNC06G21750 Oryza punctata OPUNC06G21750 N 0.000
orange1.1g048158m.g Citrus sinensis orange1.1g048158m.g N 0.000
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N 0.000
ORUFI02G05620 Oryza rufipogon ORUFI02G05620 N 0.000
OS02G0172800 Oryza sativa OS02G0172800 N 0.000
OS06G0666100 Oryza sativa OS06G0666100 N 0.000
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N 0.000
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N 0.000
Pavir.Da00255 Panicum virgatum Pavir.Da00255 N 0.000
Pavir.Db00476 Panicum virgatum Pavir.Db00476 N 0.000
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N 0.000
PK04104.1 Cannabis sativa PK04104.1 N 0.000
Pm010795 Prunus mume Pm010795 N 0.000
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N 0.000
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N 0.000
PRUPE_ppa024886mg Prunus persica PRUPE_ppa024886mg N 0.000
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N 0.000
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N 0.000
Sb04g004830 Sorghum bicolor Sb04g004830 N 0.000
Sb10g026620 Sorghum bicolor Sb10g026620 N 0.000
Si018139m.g Setaria italica Si018139m.g N 0.000
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N 0.000
TCM_006017 Theobroma cacao TCM_006017 N 0.000
Thhalv10009789m.g Eutrema salsugineum Thhalv10009789m.g N 0.000
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N 0.000
Traes_6DS_CA4C01DEF Triticum aestivum Traes_6DS_CA4C01DEF N 0.000
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N 0.000
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N 0.000
TRIUR3_32978 Triticum urartu TRIUR3_32978 N 0.000
TRIUR3_33737 Triticum urartu TRIUR3_33737 N 0.000
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N 0.000