Carubv10003685m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10003685m.g T142699_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.766 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003685m C2H2 ZF 27 49

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001588 Ricinus communis 30055.m001588 N 0.000
Aquca_005_00168 Aquilegia coerulea Aquca_005_00168 N 0.000
NAC090 Arabidopsis thaliana AT5G22380 N 0.000
Bo2g023870 Brassica oleracea Bo2g023870 N 0.000
Bo3g016870 Brassica oleracea Bo3g016870 N 0.000
Bo9g148540 Brassica oleracea Bo9g148540 N 0.000
Bostr.26527s0039 Boechera stricta Bostr.26527s0039 N 0.000
Bra002408 Brassica rapa Bra002408 N 0.000
Bra006624 Brassica rapa Bra006624 N 0.000
Bra020188 Brassica rapa Bra020188 N 0.000
Cagra.0846s0014 Capsella grandiflora Cagra.0846s0014 N 0.000
Carubv10001788m.g Capsella rubella Carubv10001788m.g N 0.000
cassava13394.valid.m1 Manihot esculenta cassava13394.valid.m1 N 0.000
cassava14235.m1 Manihot esculenta cassava14235.m1 N 0.000
cassava15688.m1 Manihot esculenta cassava15688.m1 N 0.000
cassava3989.m1 Manihot esculenta cassava3989.m1 N 0.000
Ca_15160 Cicer arietinum Ca_15160 N 0.000
Ciclev10029032m.g Citrus clementina Ciclev10029032m.g N 0.000
Cla003087 Citrullus lanatus Cla003087 I 0.000
Cla008777 Citrullus lanatus Cla008777 N 0.000
Cla018691 Citrullus lanatus Cla018691 N 0.000
Cucsa.083530 Cucumis sativus Cucsa.083530 N 0.000
Cucsa.185760 Cucumis sativus Cucsa.185760 N 0.000
Cucsa.319840 Cucumis sativus Cucsa.319840 I 0.000
Eucgr.A02635 Eucalyptus grandis Eucgr.A02635 N 0.000
Eucgr.A02636 Eucalyptus grandis Eucgr.A02636 N 0.000
Eucgr.A02637 Eucalyptus grandis Eucgr.A02637 N 0.000
Eucgr.A02638 Eucalyptus grandis Eucgr.A02638 N 0.000
Eucgr.A02639 Eucalyptus grandis Eucgr.A02639 N 0.000
Eucgr.C02446 Eucalyptus grandis Eucgr.C02446 N 0.000
Eucgr.I00583 Eucalyptus grandis Eucgr.I00583 N 0.000
Eucgr.I00587 Eucalyptus grandis Eucgr.I00587 N 0.000
Eucgr.J00505 Eucalyptus grandis Eucgr.J00505 N 0.000
Eucgr.J00508 Eucalyptus grandis Eucgr.J00508 N 0.000
Eucgr.J00509 Eucalyptus grandis Eucgr.J00509 N 0.000
Eucgr.J00511 Eucalyptus grandis Eucgr.J00511 N 0.000
Eucgr.J00512 Eucalyptus grandis Eucgr.J00512 N 0.000
Eucgr.J00513 Eucalyptus grandis Eucgr.J00513 N 0.000
Eucgr.J00514 Eucalyptus grandis Eucgr.J00514 N 0.000
Eucgr.J00516 Eucalyptus grandis Eucgr.J00516 N 0.000
Eucgr.J00517 Eucalyptus grandis Eucgr.J00517 N 0.000
Eucgr.J00518 Eucalyptus grandis Eucgr.J00518 N 0.000
Eucgr.J00519 Eucalyptus grandis Eucgr.J00519 N 0.000
Eucgr.J00520 Eucalyptus grandis Eucgr.J00520 N 0.000
evm.TU.supercontig_195.14 Carica papaya evm.TU.supercontig_195.14 N 0.000
anac090 Arabidopsis lyrata fgenesh2_kg.6__2228__AT5G22380.1 N 0.000
gene21734-v1.0-hybrid Fragaria vesca gene21734-v1.0-hybrid N 0.000
GLYMA03G35570 Glycine max GLYMA03G35570 N 0.000
GLYMA12G09670 Glycine max GLYMA12G09670 N 0.000
GLYMA12G31150 Glycine max GLYMA12G31150 N 0.000
GLYMA13G39160 Glycine max GLYMA13G39160 N 0.000
GLYMA19G38211 Glycine max GLYMA19G38211 N 0.000
Gorai.001G122800 Gossypium raimondii Gorai.001G122800 N 0.000
Gorai.002G238300 Gossypium raimondii Gorai.002G238300 N 0.000
Gorai.006G113000 Gossypium raimondii Gorai.006G113000 N 0.000
GRMZM2G439903 Zea mays GRMZM2G439903 N 0.000
GSMUA_Achr10G04720_001 Musa acuminata GSMUA_Achr10G04720_001 N 0.000
GSMUA_Achr6G19400_001 Musa acuminata GSMUA_Achr6G19400_001 N 0.000
GSMUA_Achr8G01410_001 Musa acuminata GSMUA_Achr8G01410_001 N 0.000
GSMUA_Achr9G29750_001 Musa acuminata GSMUA_Achr9G29750_001 N 0.000
Lus10004846.g Linum usitatissimum Lus10004846.g N 0.000
Lus10020643.g Linum usitatissimum Lus10020643.g N 0.000
Lus10029410.g Linum usitatissimum Lus10029410.g N 0.000
MDP0000130797 Malus domestica MDP0000130797 N 0.000
MDP0000205938 Malus domestica MDP0000205938 N 0.000
MDP0000759504 Malus domestica MDP0000759504 N 0.000
mgf020234m Mimulus guttatus mgf020234m N 0.000
MTR_4g052620 Medicago truncatula MTR_4g052620 N 0.000
MTR_7g105170 Medicago truncatula MTR_7g105170 N 0.000
OPUNC12G03240 Oryza punctata OPUNC12G03240 N 0.000
orange1.1g023996m.g Citrus sinensis orange1.1g023996m.g N 0.000
Pavir.Bb01366 Panicum virgatum Pavir.Bb01366 N 0.000
Pavir.Ha01768 Panicum virgatum Pavir.Ha01768 N 0.000
Pavir.Hb01808 Panicum virgatum Pavir.Hb01808 N 0.000
Pavir.J13106 Panicum virgatum Pavir.J13106 N 0.000
PGSC0003DMG400026332 Solanum tuberosum PGSC0003DMG400026332 N 0.000
PK27925.1 Cannabis sativa PK27925.1 N 0.000
PK29014.1 Cannabis sativa PK29014.1 N 0.000
Pm001403 Prunus mume Pm001403 N 0.000
POPTR_0001s22630 Populus trichocarpa POPTR_0001s22630 N 0.000
POPTR_0009s02430 Populus trichocarpa POPTR_0009s02430 N 0.000
PRUPE_ppa010337mg Prunus persica PRUPE_ppa010337mg N 0.000
SapurV1A.0450s0140 Salix purpurea SapurV1A.0450s0140 N 0.000
SapurV1A.1671s0050 Salix purpurea SapurV1A.1671s0050 N 0.000
SapurV1A.3648s0010 Salix purpurea SapurV1A.3648s0010 N 0.000
Sb05g003400 Sorghum bicolor Sb05g003400 N 0.000
Si026707m.g Setaria italica Si026707m.g N 0.000
Solyc09g010160.1 Solanum lycopersicum Solyc09g010160.1 N 0.000
Solyc11g068620.1 Solanum lycopersicum Solyc11g068620.1 N 0.000
TCM_041364 Theobroma cacao TCM_041364 N 0.000
Thhalv10014563m.g Eutrema salsugineum Thhalv10014563m.g N 0.000
VIT_06s0080g00780 Vitis vinifera VIT_06s0080g00780 N 0.000
VIT_18s0041g00700 Vitis vinifera VIT_18s0041g00700 N 0.000