Bra031159 (Brassica rapa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 Bra031159 T164307_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra031159.1-P CSD 13 79

Links

Other CSD family TFs
Other Brassica rapa TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014322 Aedes aegypti AAEL014322 I
AAL11024 Xenopus tropicalis AAL11024 I
AALB008334 Anopheles albimanus AALB008334 I
Aan_R006542 Calypte anna Aan_R006542 I
AARA002094 Anopheles arabiensis AARA002094 I
AATE018889 Anopheles atroparvus AATE018889 I
ACHR010174 Anopheles christyi ACHR010174 I
ACOM034431 Anopheles coluzzii ACOM034431 I
ACUA006973 Anopheles culicifacies ACUA006973 I
ADAC002492 Anopheles darlingi ADAC002492 I
ADIR010448 Anopheles dirus ADIR010448 I
AEPI006062 Anopheles epiroticus AEPI006062 I
AFAF001067 Anopheles farauti AFAF001067 I
Afo_R014556 Aptenodytes forsteri Afo_R014556 I
AFUN011634 Anopheles funestus AFUN011634 I
Alligator_sinensis_CCG013129.1 Alligator sinensis Alligator_sinensis_CCG013129.1 I
AMAM006832 Anopheles maculatus AMAM006832 I
AMEM001613 Anopheles merus AMEM001613 I
AMIN003460 Anopheles minimus AMIN003460 I
AQUA000514 Anopheles quadriannulatus AQUA000514 I
ASTEI05690 Anopheles stephensi ASTEI05690 I
A_07871 Schistosoma haematobium A_07871 I
Brh_R006718 Buceros rhinoceros Brh_R006718 I
BXY_0489100 Bursaphelenchus xylophilus BXY_0489100 I
CapteG36721 Capitella teleta CapteG36721 I
Cflo_03885--XP_001120527.1_APIME Camponotus floridanus Cflo_03885--XP_001120527.1_APIME I
CGI_10007380 Crassostrea gigas CGI_10007380 I
CLEC002330 Cimex lectularius CLEC002330 I
CPIJ005345 Culex quinquefasciatus CPIJ005345 I
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I
csin100742 Clonorchis sinensis csin100742 I
D915_09890 Fasciola hepatica D915_09890 I
D917_06339 Trichinella nativa D917_06339 I
D918_04086 Trichuris suis D918_04086 I
ECANG7_02004 Echinococcus canadensis ECANG7_02004 I
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I
EFV52759 Trichinella spiralis EFV52759 I
EmuJ_001053100 Echinococcus multilocularis EmuJ_001053100 I
ENSAMEG00000013193 Ailuropoda melanoleuca ENSAMEG00000013193 I
ENSAPLG00000005673 Anas platyrhynchos ENSAPLG00000005673 I
MYF5 Bos taurus ENSBTAG00000026972 I
MYF5 Canis familiaris ENSCAFG00000005808 I
MYF5 Choloepus hoffmanni ENSCHOG00000008319 I
MYF5 Callithrix jacchus ENSCJAG00000019340 I
MYF5 Cavia porcellus ENSCPOG00000007766 I
ENSCSAG00000003889 Chlorocebus sabaeus ENSCSAG00000003889 I
myod1 Danio rerio ENSDARG00000030110 I
MYF5 Dasypus novemcinctus ENSDNOG00000034747 I
Myf5 Dipodomys ordii ENSDORG00000015437 I
MYF5 Equus caballus ENSECAG00000020047 I
MYF5 Erinaceus europaeus ENSEEUG00000011612 I
MYF5 Echinops telfairi ENSETEG00000011255 I
ENSFALG00000000758 Ficedula albicollis ENSFALG00000000758 I
MYF5 Felis catus ENSFCAG00000015011 I
MYF5 Homo sapiens ENSG00000111049 D
MYOD1 Gallus gallus ENSGALG00000006216 I
MYF5 Gorilla gorilla ENSGGOG00000004366 I
ENSGMOG00000011389 Gadus morhua ENSGMOG00000011389 I
ENSLACG00000014430 Latimeria chalumnae ENSLACG00000014430 I
MYF5 Loxodonta africana ENSLAFG00000016473 I
ENSLOCG00000002164 Lepisosteus oculatus ENSLOCG00000002164 I
ENSMGAG00000007210 Meleagris gallopavo ENSMGAG00000007210 I
ENSMICG00000011211 Microcebus murinus ENSMICG00000011211 I
MYF5 Myotis lucifugus ENSMLUG00000004943 I
MYF5 Macaca mulatta ENSMMUG00000011669 I
ENSMPUG00000004935 Mustela putorius furo ENSMPUG00000004935 I
Myf5 Mus musculus ENSMUSG00000000435 D
ENSNLEG00000005207 Nomascus leucogenys ENSNLEG00000005207 I
ENSOARG00000015159 Ovis aries ENSOARG00000015159 I
MYF5 Oryctolagus cuniculus ENSOCUG00000025477 I
MYF5 Ochotona princeps ENSOPRG00000009007 I
ENSP00000228644 Macaca fascicularis ENSP00000228644 I
ENSPANG00000020394 Papio anubis ENSPANG00000020394 I
MYF5 Procavia capensis ENSPCAG00000001722 I
ENSPPYG00000004800 Pongo abelii ENSPPYG00000004800 I
MYF5 Pan troglodytes ENSPTRG00000005261 I
MYF5 Pteropus vampyrus ENSPVAG00000003336 I
Myf5 Rattus norvegicus ENSRNOG00000004768 I
MYF5 Sorex araneus ENSSARG00000008217 I
MYF5 Sus scrofa ENSSSCG00000000937 I
ENSSTOG00000015810 Ictidomys tridecemlineatus ENSSTOG00000015810 I
MYF5 Tupaia belangeri ENSTBEG00000008363 I
MYOD1 Taeniopygia guttata ENSTGUG00000008814 I
myod1 Takifugu rubripes ENSTRUG00000016609 I
ENSTSYG00000003282 Tarsius syrichta ENSTSYG00000003282 I
MYF5 Tursiops truncatus ENSTTRG00000014691 I
MYF5 Vicugna pacos ENSVPAG00000001927 I
nau Drosophila melanogaster FBgn0002922 D
GA10192 Drosophila pseudoobscura FBgn0070251 I
GF18746 Drosophila ananassae FBgn0095763 I
GG12413 Drosophila erecta FBgn0104701 I
GH13904 Drosophila grimshawi FBgn0121380 I
GI24830 Drosophila mojavensis FBgn0147551 I
GL13832 Drosophila persimilis FBgn0151437 I
GM23547 Drosophila sechellia FBgn0178413 I
GD18361 Drosophila simulans FBgn0189889 I
GJ24474 Drosophila virilis FBgn0211554 I
GK22777 Drosophila willistoni FBgn0224749 I
GE23932 Drosophila yakuba FBgn0241076 I
fgenesh2_pg.scaffold_226000031 Branchiostoma floridae fgenesh2_pg.scaffold_226000031 I
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I
GB55306 Apis mellifera GB55306 I
Gfo_R009107 Geospiza fortis Gfo_R009107 I
HmN_000553800 Hymenolepis microstoma HmN_000553800 I
HNAJ_0001324201 Hymenolepis nana HNAJ_0001324201 I
Hsal_05065--XP_001120527.1_APIME Harpegnathos saltator Hsal_05065--XP_001120527.1_APIME I
LCUP007809 Lucilia cuprina LCUP007809 I
LDEC009949 Leptinotarsa decemlineata LDEC009949 I
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I
LotgiG99982 Lottia gigantea LotgiG99982 I
MCOS_0000168001 Mesocestoides corti MCOS_0000168001 I
Myotis_brandtii_MYF5_10034131 Myotis brandtii Myotis_brandtii_MYF5_10034131 I
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I
NV10294 Nasonia vitripennis NV10294 I
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I
Ogr16343 Ophisaurus gracilis Ogr16343 I
PHUM424120 Pediculus humanus PHUM424120 I
Pvit_01710 Pogona vitticeps Pvit_01710 I
RPRC009735 Rhodnius prolixus RPRC009735 I
Sakowv30008488m.g Saccoglossus kowalevskii Sakowv30008488m.g I
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I
Sjc_0011830 Schistosoma japonicum Sjc_0011830 I
Smp_167400 Schistosoma mansoni Smp_167400 I
SMU15001149 Schmidtea mediterranea SMU15001149 I
SPER_0001779001 Spirometra erinaceieuropaei SPER_0001779001 I
SPER_0002215301 Spirometra erinaceieuropaei SPER_0002215301 I
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I
SSLN_0000613901 Schistocephalus solidus SSLN_0000613901 I
T265_10140 Opisthorchis viverrini T265_10140 I
TASK_0000583801 Taenia asiatica TASK_0000583801 I
TC015855 Tribolium castaneum TC015855 I
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I
TsM_000079400 Taenia solium TsM_000079400 I
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I
myod1 Xenopus tropicalis XB-GENE-1017498 I
myod1.S Xenopus laevis XB-GENE-1017506 I
myf5 Xenopus tropicalis XB-GENE-493550 I
myf5.L Xenopus laevis XB-GENE-866267 I
YQE_11476 Dendroctonus ponderosae YQE_11476 I